Align tartronate semialdehyde reductase 2 (characterized)
to candidate AO356_19610 AO356_19610 2-hydroxy-3-oxopropionate reductase
Query= ecocyc::G6278-MONOMER (292 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_19610 Length = 296 Score = 373 bits (958), Expect = e-108 Identities = 189/291 (64%), Positives = 230/291 (79%), Gaps = 1/291 (0%) Query: 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVAD-ELLSLGAVSVETARQVTEASDIIF 60 K+GFIG GIMG PMA+NL +AGH L ++ A +LL+ GAV++ ++V + ++ I Sbjct: 3 KIGFIGTGIMGHPMALNLQKAGHSLFLSQHHDAAPADLLAGGAVALANPKEVAQEAEFII 62 Query: 61 IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVS 120 +MVPDTPQVE+VL +G GK ++DMSSISP TK FA ++NE G YLDAPVS Sbjct: 63 VMVPDTPQVEDVLLRADGIAAGVGAGKVVIDMSSISPTATKAFAAKINEKGAQYLDAPVS 122 Query: 121 GGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNI 180 GGE+GA+ TLSIMVGGD A FER PLF+ +GKNITLVGGNGDGQT KVANQIIVALNI Sbjct: 123 GGEVGAKAATLSIMVGGDSAAFERALPLFQAMGKNITLVGGNGDGQTAKVANQIIVALNI 182 Query: 181 EAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLN 240 +AV+EALLFA+K GADP +VR+ALMGGFASS+ILEVHGERMIK TF+PGF+I+LHQKDLN Sbjct: 183 QAVAEALLFAAKNGADPAKVREALMGGFASSKILEVHGERMIKGTFDPGFRISLHQKDLN 242 Query: 241 LALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHKL 291 LALQ AK L +NLPNTA Q++F+TCAA GGS DHSAL++ LE MAN + Sbjct: 243 LALQGAKELNINLPNTANAQQVFSTCAAIGGSHWDHSALIKGLEHMANFSI 293 Lambda K H 0.318 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 326 Number of extensions: 5 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 292 Length of database: 296 Length adjustment: 26 Effective length of query: 266 Effective length of database: 270 Effective search space: 71820 Effective search space used: 71820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate AO356_19610 AO356_19610 (2-hydroxy-3-oxopropionate reductase)
to HMM TIGR01505 (2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60))
../bin/blast/fastacmd -i /tmp/list.7299.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7299.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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