Align N-formylglutamate deformylase (EC 3.5.1.68) (characterized)
to candidate AO356_09590 AO356_09590 N-formylglutamate deformylase
Query= reanno::pseudo5_N2C3_1:AO356_09590 (267 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_09590 Length = 267 Score = 551 bits (1419), Expect = e-162 Identities = 267/267 (100%), Positives = 267/267 (100%) Query: 1 VEKVLNFKQGRVPLLVSMPHAGLRLTPAVKAGLIPEAQSLPDTDWHIPQLYEFANELGAS 60 VEKVLNFKQGRVPLLVSMPHAGLRLTPAVKAGLIPEAQSLPDTDWHIPQLYEFANELGAS Sbjct: 1 VEKVLNFKQGRVPLLVSMPHAGLRLTPAVKAGLIPEAQSLPDTDWHIPQLYEFANELGAS 60 Query: 61 TLAAEYSRFVVDLNRPSDDKPMYVGATTGLYPATLFDGVPLFREGLEPSAEERATYLQQV 120 TLAAEYSRFVVDLNRPSDDKPMYVGATTGLYPATLFDGVPLFREGLEPSAEERATYLQQV Sbjct: 61 TLAAEYSRFVVDLNRPSDDKPMYVGATTGLYPATLFDGVPLFREGLEPSAEERATYLQQV 120 Query: 121 WMPYHQALRQELARLKAEFGYALLFDAHSIRSVIPHLFDGKLPDFNLGTFNGASCDPTLA 180 WMPYHQALRQELARLKAEFGYALLFDAHSIRSVIPHLFDGKLPDFNLGTFNGASCDPTLA Sbjct: 121 WMPYHQALRQELARLKAEFGYALLFDAHSIRSVIPHLFDGKLPDFNLGTFNGASCDPTLA 180 Query: 181 SQLEAICARHGQFTHVLNGRFKGGHITRHYGNPAEDIHAVQLELCQSTYMEEFEPFNYRP 240 SQLEAICARHGQFTHVLNGRFKGGHITRHYGNPAEDIHAVQLELCQSTYMEEFEPFNYRP Sbjct: 181 SQLEAICARHGQFTHVLNGRFKGGHITRHYGNPAEDIHAVQLELCQSTYMEEFEPFNYRP 240 Query: 241 DLAAPTQVVLRELLEGFLAWGQKTYKH 267 DLAAPTQVVLRELLEGFLAWGQKTYKH Sbjct: 241 DLAAPTQVVLRELLEGFLAWGQKTYKH 267 Lambda K H 0.321 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 439 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 267 Length of database: 267 Length adjustment: 25 Effective length of query: 242 Effective length of database: 242 Effective search space: 58564 Effective search space used: 58564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate AO356_09590 AO356_09590 (N-formylglutamate deformylase)
to HMM TIGR02017 (hutG: N-formylglutamate deformylase (EC 3.5.1.68))
../bin/blast/fastacmd -i /tmp/list.25184.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25184.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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