Align 3-ketoacyl-CoA thiolase; Acetyl-CoA acyltransferase; Beta-ketothiolase; EC 2.3.1.16 (characterized)
to candidate AO356_03560 AO356_03560 acetyl-CoA acetyltransferase
Query= SwissProt::O32177 (391 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_03560 Length = 394 Score = 338 bits (867), Expect = 2e-97 Identities = 188/395 (47%), Positives = 247/395 (62%), Gaps = 10/395 (2%) Query: 1 MKEAVIVSGARTPVGKAKKGSLATVRPDDLGAICVKETLKRAGGYEGNIDDLIIGCATPE 60 M+E VIV RT + K+ +G RPDD+ A CV L R +++D I+G + E Sbjct: 1 MREVVIVDSVRTGLAKSFRGKFNMTRPDDMAAHCVNALLARNDINPASVEDCIVGAGSNE 60 Query: 61 AEQGLNMARNIGALAGLPYTVPAITVNRYCSSGLQSIAYAAEKIMLGAYDTAIAGGAESM 120 QG N+ RN+ L+ L +T+NR+CSSGLQ+IA AA +I G D +AGG ES+ Sbjct: 61 GAQGYNIGRNVAVLSQLGIGTAGMTLNRFCSSGLQAIAIAANQIASGCSDIIVAGGVESI 120 Query: 121 SQVPMMGHVTRPNLA---LAEKAPEYYMSMGHTAEQVAKKYGVSREDQDAFAVRSHQNAA 177 S M V NL L E+ P Y MG TAE VA++Y VSRE+QD +A++S Q A Sbjct: 121 SLT--MKSVNTDNLINPLLKEQVPGIYFPMGQTAEIVARRYQVSREEQDRYALQSQQRTA 178 Query: 178 KALAEGKFKDEIVPVEVTVTEIGEDHKPMEKQF---VFSQDEGVRPQTTADILSTLRPAF 234 KA A G F DEI+P+ V ED Q V D+ RP TT + L+ L+P F Sbjct: 179 KAQAAGLFDDEIIPMAVKYRV--EDKNTGVVQILDGVVDHDDCNRPDTTYESLAGLKPVF 236 Query: 235 SVDGTVTAGNSSQTSDGAAAVMLMDREKADALGLAPLVKFRSFAVGGVPPEVMGIGPVEA 294 + DG+VTAGNSSQ SDGA+ ++M EKA ALGL P FR F V G P+ MGIGPV + Sbjct: 237 AEDGSVTAGNSSQLSDGASMTLVMSLEKALALGLKPKAFFRGFTVAGCEPDEMGIGPVFS 296 Query: 295 IPRALKLAGLQLQDIGLFELNEAFASQAIQVIRELGIDEEKVNVNGGAIALGHPLGCTGT 354 +P+ LK GLQ+ DI L+ELNEAFASQ + L ID +K NVNGG+I++GHP G TG+ Sbjct: 297 VPKLLKAKGLQIADIDLWELNEAFASQCLYSRDRLEIDPQKYNVNGGSISIGHPFGMTGS 356 Query: 355 KLTLSLIHEMKRRNEQFGVVTMCIGGGMGAAGVFE 389 + L+ E++RRN ++G+VTMC+GGGMGA G+FE Sbjct: 357 RQVGHLVRELQRRNLRYGIVTMCVGGGMGATGLFE 391 Lambda K H 0.316 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 424 Number of extensions: 16 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 391 Length of database: 394 Length adjustment: 31 Effective length of query: 360 Effective length of database: 363 Effective search space: 130680 Effective search space used: 130680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate AO356_03560 AO356_03560 (acetyl-CoA acetyltransferase)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))
../bin/blast/fastacmd -i /tmp/list.3649.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3649.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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