Align threonine ammonia-lyase (EC 4.3.1.19) (characterized)
to candidate AO356_10330 AO356_10330 threonine dehydratase
Query= BRENDA::P04968 (514 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_10330 Length = 504 Score = 530 bits (1365), Expect = e-155 Identities = 263/500 (52%), Positives = 360/500 (72%), Gaps = 2/500 (0%) Query: 15 EYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLT 74 +Y++ +L + VY+ A TPLQ +LS RL N IL+KRED QPV SFK+RGAY + L+ Sbjct: 4 QYVKKILTSRVYDVAVETPLQTARQLSERLGNSILLKREDLQPVFSFKIRGAYNKLTQLS 63 Query: 75 EEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGAN 134 +E++A GV+TASAGNHAQG+A ++ LGVKA IVMP T +IKV+ VR GG+V+LHG + Sbjct: 64 DEERARGVVTASAGNHAQGLALAAKVLGVKATIVMPKTTPEIKVEGVRSRGGKVVLHGDS 123 Query: 135 FDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQD-AHLDRVFVPVGGGGLA 193 F EA A +++L ++G+ ++ P+D P IAGQGT+A+E+L+Q LD +FVPVGGGGL Sbjct: 124 FPEALAYSLKLVDEKGYVYIHPYDDPHTIAGQGTVAMEILRQHPGRLDAIFVPVGGGGLI 183 Query: 194 AGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFR 253 AG+A +K L P IK+I VE +DS CL+AA+ AG V LP VGLFA+GVAV +IG TF Sbjct: 184 AGIAAYVKYLRPDIKIIGVEPDDSNCLQAAMAAGERVVLPTVGLFADGVAVAQIGQHTFD 243 Query: 254 LCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHI 313 +C+ ++D++ITV +D ICAA+KD+++D R++ EP+GAL +AG+KKY+ I G+ L I Sbjct: 244 ICKHHVDEVITVSTDEICAAIKDIYDDTRSITEPAGALGVAGIKKYVESRGISGQTLVAI 303 Query: 314 LSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFAD 373 SGANVNF LR+V+ER ELGE REA++AVTIPE+ GSF FC+ +G R +TEFNYR+ Sbjct: 304 DSGANVNFDRLRHVAERAELGEGREAIIAVTIPEQPGSFKAFCEAVGKRQITEFNYRYNT 363 Query: 374 AKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQE 433 A IFVGV+ + R ++ L + G+ V+DL+D+E+AKLH+R+MVGG +H + E Sbjct: 364 GSEAHIFVGVQTHPENDPRSALIASLTEQGFPVLDLTDNELAKLHIRHMVGGHAAHVIDE 423 Query: 434 RLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGDHEPDF-ETRL 492 + FEFPE PGAL FLN LG WNIS+FHYR+HG GRV+A ++ E L Sbjct: 424 VVLRFEFPERPGALFNFLNKLGGRWNISMFHYRNHGAADGRVVAGLQVPHDERHLVPAAL 483 Query: 493 NELGYDCHDETNNPAFRFFL 512 E+GY DE++NPA++ FL Sbjct: 484 EEIGYPYWDESDNPAYQLFL 503 Lambda K H 0.321 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 707 Number of extensions: 36 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 514 Length of database: 504 Length adjustment: 34 Effective length of query: 480 Effective length of database: 470 Effective search space: 225600 Effective search space used: 225600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate AO356_10330 AO356_10330 (threonine dehydratase)
to HMM TIGR01124 (ilvA: threonine ammonia-lyase, biosynthetic (EC 4.3.1.19))
../bin/blast/fastacmd -i /tmp/list.29635.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29635.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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