Align L-threonine dehydratase biosynthetic IlvA; EC 4.3.1.19; Threonine deaminase (uncharacterized)
to candidate AO356_27710 AO356_27710 threonine dehydratase
Query= curated2:P37946 (422 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_27710 Length = 333 Score = 230 bits (586), Expect = 5e-65 Identities = 133/331 (40%), Positives = 193/331 (58%), Gaps = 9/331 (2%) Query: 7 ENSLIQ--VKHILKAHQNVKDVVIHTPLQRNDRLSERYECNIYLKREDLQVVRSFKLRGA 64 E +L++ VK IL A V ++ + TPLQ LSE I LKREDLQ SFK+RGA Sbjct: 7 EQTLLEHYVKKILAAP--VYELAVRTPLQAAPALSEALGNRILLKREDLQPTFSFKIRGA 64 Query: 65 YHKMKQLSSEQTENGVVCASAGNHAQGVAFSCKHLGIHGKIFMPSTTPRQKVSQVELFGK 124 Y+K+ L+ EQ GV+ ASAGNHAQGVA + + LGI +I MP TTP+ KV V G Sbjct: 65 YNKLVHLTPEQRARGVITASAGNHAQGVALAARELGISARIVMPVTTPQLKVLGVRNRGA 124 Query: 125 GFIDIILTGDTFDDVYKSAAECCEAESRTFIHPFDDPDVMAGQGTLAVEILNDIDTEPHF 184 + +L GD+F A E E R F+ PFDDPDV+AGQGT+A+EIL Sbjct: 125 ---EALLHGDSFPFALAHALELAEQTGREFVSPFDDPDVIAGQGTVAMEILRQHPGRLDA 181 Query: 185 LFASVGGGGLLSGVGTYLKNVSPDTKVIAVEPAGAASYFESNKAGHVVTLDKIDKFVDGA 244 +F VGGGGL++G+ Y+K + P+ ++I VE +A + AG VTL ++ F DG Sbjct: 182 IFVPVGGGGLIAGIAAYVKYLRPEVRIIGVESQHSACLQAALAAGERVTLPEVGTFADGV 241 Query: 245 AVKKIGEETFRTLETVVDDILLVPEGKVCTSILELYNECAVVAEPAGALSVAALDLY--K 302 AV +IG VD+++ V ++C +I ++Y++ + EP+GAL+VA + Y Sbjct: 242 AVAQIGAHGLDICRFCVDEVMTVSNDQLCAAIKDIYDDTRSITEPSGALAVAGIKQYVAH 301 Query: 303 DQIKGKNVVCVVSGGNNDIGRMQEMKERSLI 333 +G+ +V + SG N + ++ + ER+ + Sbjct: 302 TGARGETLVAIDSGANINFDSLRHVAERAAV 332 Lambda K H 0.318 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 329 Number of extensions: 15 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 422 Length of database: 333 Length adjustment: 30 Effective length of query: 392 Effective length of database: 303 Effective search space: 118776 Effective search space used: 118776 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate AO356_27710 AO356_27710 (threonine dehydratase)
to HMM TIGR01124 (ilvA: threonine ammonia-lyase, biosynthetic (EC 4.3.1.19))
../bin/blast/fastacmd -i /tmp/list.29986.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29986.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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