Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate AO356_11880 AO356_11880 dihydrolipoamide dehydrogenase
Query= BRENDA::A0A0H2ZHZ0 (467 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_11880 Length = 466 Score = 711 bits (1836), Expect = 0.0 Identities = 346/465 (74%), Positives = 402/465 (86%) Query: 2 MESYDVIVIGAGPGGYNAAIRAGQLGLKVACVEGRETLGGTCLNVGCMPSKALLHASELY 61 M +YDV+++G GPGGYNAAIRAGQLGLK ACVEGR TLGGTCLNVGCMPSKALLHASELY Sbjct: 1 MSNYDVVILGGGPGGYNAAIRAGQLGLKAACVEGRATLGGTCLNVGCMPSKALLHASELY 60 Query: 62 AAASGGEFARLGIRVSPELDLAQMMKQKDESVAALTRGVEFLFRKHKVQWIKGWARLQGE 121 AA+G EFA LGI VSP L+LAQMMKQKDESV LT+G+EFLFRK+KV WIKGW + G Sbjct: 61 EAATGTEFANLGIEVSPTLNLAQMMKQKDESVTGLTKGIEFLFRKNKVDWIKGWGHIDGP 120 Query: 122 GRVGVALADGGHAQLEARDIVIATGSEPAPLPGVPVDNQRILDSTGALELAEVPRHLVVI 181 G+V V DG +L A+DIVIATGSEP PLPGV +DNQRILDSTGAL L+EVPRHLVVI Sbjct: 121 GKVTVTGDDGSKTELTAKDIVIATGSEPMPLPGVTIDNQRILDSTGALSLSEVPRHLVVI 180 Query: 182 GAGVIGLELGSVWRRLGAQVTVLEYLERICPGLDGETARTLQRALTRQGMRFRLGTRVVA 241 GAGVIGLELGSVWRRLGAQVTV+EYL+RICPG+DGE +TLQRAL +QG++F+L ++V Sbjct: 181 GAGVIGLELGSVWRRLGAQVTVVEYLDRICPGVDGEAGKTLQRALAKQGIQFKLSSKVTG 240 Query: 242 ARSGEQGVELDLQPAAGGATESLQADYVLVAIGRRPYTEGLGLETVGLASDRRGMLENQG 301 A + GV+L ++PAAGG + L ADYVLVAIGRRPYT+GLGLE VGL++D+RGML NQ Sbjct: 241 ATTSASGVQLQIEPAAGGEAQILDADYVLVAIGRRPYTQGLGLENVGLSTDKRGMLANQH 300 Query: 302 QRSAAPGVWVIGDVTSGPMLAHKAEEEAIVCIERIAGHAAEMNAEVIPSVIYTQPEVASV 361 R+ APGVWVIGDVT+GPMLAHKAE+EA+ CIE+IAG AAE+N +IPSVIYT+PE+ASV Sbjct: 301 HRTEAPGVWVIGDVTAGPMLAHKAEDEAMACIEQIAGKAAEVNYALIPSVIYTRPELASV 360 Query: 362 GLGEEQLQAARREYKVGRFPFSANSRAKINHESEGFIKILSDARSDQVLGVHMIGPGVSE 421 G EEQL+A R YKVG+FPF+ANSRAKINHE+EGF K+L+D R+D++LGVH++GP VSE Sbjct: 361 GQTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKVLADERTDEILGVHLVGPSVSE 420 Query: 422 MIGEACVAMEFSASAEDLALTCHPHPTRSEALRQAAMDVHGRAMQ 466 MIGE CVAMEFSASAED+ALTCHPHPTRSEALRQAAM+V G A Q Sbjct: 421 MIGEYCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVEGMATQ 465 Lambda K H 0.318 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 793 Number of extensions: 27 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 467 Length of database: 466 Length adjustment: 33 Effective length of query: 434 Effective length of database: 433 Effective search space: 187922 Effective search space used: 187922 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate AO356_11880 AO356_11880 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.9967.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9967.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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