Align 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (characterized)
to candidate AO356_07865 AO356_07865 3-hydroxyisobutyrate dehydrogenase
Query= reanno::pseudo3_N2E3:AO353_05985 (294 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_07865 Length = 295 Score = 539 bits (1389), Expect = e-158 Identities = 271/294 (92%), Positives = 282/294 (95%) Query: 1 MKIAFIGLGNMGAPMARNLIKAGHSLNLVDLNKAVLAELAQLGGTISATAREAAQGAELV 60 M IAFIGLGNMGAPMARNL+KAGHSLNL DLN+ VLAELA LGGT+SA+ R+AAQGA LV Sbjct: 1 MNIAFIGLGNMGAPMARNLLKAGHSLNLFDLNQTVLAELAALGGTVSASPRDAAQGAALV 60 Query: 61 ITMLPAAVHVRSVWLGEDGVLAGIAKGVPAVDCSTIDPQTARDVAAAAAKQGVAMADAPV 120 ITMLPAA HVRSVWLGEDGVLAGIA G PAVDCSTIDPQTARDVAAAAAKQGVAMADAPV Sbjct: 61 ITMLPAAAHVRSVWLGEDGVLAGIAAGTPAVDCSTIDPQTARDVAAAAAKQGVAMADAPV 120 Query: 121 SGGTGGAAAGTLTFMVGATPELFATLQPVLAQMGRNIVHCGEVGTGQIAKICNNLLLAIS 180 SGGTGGAAAGTLTFMVGAT ELFATLQPVLAQMGRNIVHCGEVGTGQIAKICNNLLL IS Sbjct: 121 SGGTGGAAAGTLTFMVGATAELFATLQPVLAQMGRNIVHCGEVGTGQIAKICNNLLLGIS 180 Query: 181 MVGVSEAMALGDALGIDTQVLAGIINSSTGRCWSSEMYNPWPGIVETAPASRGYTGGFGA 240 MVGVSEAMALGDALGIDTQVLAGIINSSTGRCWSS+ YNPWPG++ETAPASRGYTGGFGA Sbjct: 181 MVGVSEAMALGDALGIDTQVLAGIINSSTGRCWSSDTYNPWPGVIETAPASRGYTGGFGA 240 Query: 241 ELMLKDLGLATEAARQAHQPVMLGAVAQQLYQAMSQRGEGGKDFSAIINSYRKP 294 +LMLKDLGLATEAARQAHQPV+LGAVAQQLYQAMSQRGEGGKDFSAI+NSYRKP Sbjct: 241 DLMLKDLGLATEAARQAHQPVVLGAVAQQLYQAMSQRGEGGKDFSAIVNSYRKP 294 Lambda K H 0.317 0.132 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 399 Number of extensions: 8 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 294 Length of database: 295 Length adjustment: 26 Effective length of query: 268 Effective length of database: 269 Effective search space: 72092 Effective search space used: 72092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate AO356_07865 AO356_07865 (3-hydroxyisobutyrate dehydrogenase)
to HMM TIGR01692 (mmsB: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31))
../bin/blast/fastacmd -i /tmp/list.23873.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23873.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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