Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate Pf6N2E2_4600 Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
Query= SwissProt::P22008 (273 letters) >FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4600 Length = 272 Score = 385 bits (990), Expect = e-112 Identities = 202/273 (73%), Positives = 234/273 (85%), Gaps = 1/273 (0%) Query: 1 MSTPRIAFIGAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEA 60 MS RIAFIGAGNMAASLIGGLRA+G+ A+ IRASDPG E R +++ E I NA+A Sbjct: 1 MSNTRIAFIGAGNMAASLIGGLRAKGLDASLIRASDPGEETRNRVSREQGIQTFADNAQA 60 Query: 61 VADADVVVLSVKPQAMKAVCQALAPALKPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMP 120 + ADV+VL+VKPQAMK VC AL P+LKP QL+VSIAAGI CAS+ WLG+ +P+VRCMP Sbjct: 61 IDGADVIVLAVKPQAMKTVCAALRPSLKPHQLVVSIAAGITCASMNNWLGE-QPIVRCMP 119 Query: 121 NTPALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYF 180 NTPALLRQG SGL+A +QVSAAQ +QA +LLSAVG+ALWLD E Q+DAVTAVSGSGPAYF Sbjct: 120 NTPALLRQGVSGLFATSQVSAAQRQQAEELLSAVGLALWLDTEQQLDAVTAVSGSGPAYF 179 Query: 181 FLLMQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAA 240 FLL++AMT AGEKLGL RETA++LTLQTALGAA MA+SS+V+ AELRRRVTSP GTTEAA Sbjct: 180 FLLIEAMTAAGEKLGLPRETAAQLTLQTALGAAHMAVSSDVDAAELRRRVTSPAGTTEAA 239 Query: 241 IKSFQANGFEALVEQALNAASQRSAELAEQLGQ 273 IKSFQA GFEALVE+AL AA+ RSAE+AEQLGQ Sbjct: 240 IKSFQAGGFEALVEKALGAAAHRSAEMAEQLGQ 272 Lambda K H 0.315 0.127 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 277 Number of extensions: 7 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 272 Length adjustment: 25 Effective length of query: 248 Effective length of database: 247 Effective search space: 61256 Effective search space used: 61256 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)
Align candidate Pf6N2E2_4600 (Pyrroline-5-carboxylate reductase (EC 1.5.1.2))
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))
../bin/blast/fastacmd -i /tmp/list.29919.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29919.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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