Align Succinylglutamate desuccinylase (EC 3.5.1.96) (characterized)
to candidate Pf6N2E2_5671 Succinylglutamate desuccinylase (EC 3.5.1.96)
Query= reanno::pseudo13_GW456_L13:PfGW456L13_1977 (336 letters) >FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5671 Length = 335 Score = 602 bits (1552), Expect = e-177 Identities = 305/336 (90%), Positives = 320/336 (95%), Gaps = 1/336 (0%) Query: 1 MLALGKLLELTLAGREPAEKTQLTVEGVRMRWLSEGALEVRPPEARDNGLDLLLSAGIHG 60 MLALGKLLELTLAGREPAEKTQLTVEGVRMRWLSEGALEV+PPEARDNGLDLLLSAGIHG Sbjct: 1 MLALGKLLELTLAGREPAEKTQLTVEGVRMRWLSEGALEVKPPEARDNGLDLLLSAGIHG 60 Query: 61 NETAPIELLDRLLHDIARGDLKPRARILFLFGNPEAIRKGERFVEQDVNRLFNGRHEQSS 120 NETAPIELLDRLLHDIARG LKPRARILFLFGNPEAIR+GERFVEQDVNRLFNGRHE S Sbjct: 61 NETAPIELLDRLLHDIARGHLKPRARILFLFGNPEAIRRGERFVEQDVNRLFNGRHELSG 120 Query: 121 GCEALRACELERLAASFFSLPDRQRLHYDLHTAIRGSKIEQFALYPWKEDRQHSRQELAR 180 G EALRACELERLAASFFS P+R RLHYDLHTAIRGSKIEQFALYPWKE RQHSR+ELAR Sbjct: 121 GPEALRACELERLAASFFSRPERSRLHYDLHTAIRGSKIEQFALYPWKEGRQHSRRELAR 180 Query: 181 LRAAGMEAVLLQNKPSIVFSSYTYDKLGAEAFTLELGKARPFGQNDGVNVSLLEKRLKQI 240 LRA GMEAVLLQNKPSIVFS+YTYD+LGAE+FTLELGKARPFGQNDGVNVSLLE RL+QI Sbjct: 181 LRAGGMEAVLLQNKPSIVFSAYTYDQLGAESFTLELGKARPFGQNDGVNVSLLETRLQQI 240 Query: 241 IEGTEPELTEDALDGLQLYSVAREIIKHSDSFRLNLPADIENFSELEVGYLLAEDIANTR 300 IEG EPEL ++ LDGLQL+SVAREIIKHSDSFRLNLPADIENFSEL GY+LAEDIA TR Sbjct: 241 IEGNEPEL-DEGLDGLQLFSVAREIIKHSDSFRLNLPADIENFSELGKGYVLAEDIAQTR 299 Query: 301 WIIEEEGARIIFPNPRVKNGLRAGILVVPTTDENLA 336 W+IEEEGARIIFPNP+VKNGLRAGIL+VP TDENLA Sbjct: 300 WVIEEEGARIIFPNPKVKNGLRAGILIVPATDENLA 335 Lambda K H 0.319 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 507 Number of extensions: 19 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 336 Length of database: 335 Length adjustment: 28 Effective length of query: 308 Effective length of database: 307 Effective search space: 94556 Effective search space used: 94556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate Pf6N2E2_5671 (Succinylglutamate desuccinylase (EC 3.5.1.96))
to HMM TIGR03242 (astE: succinylglutamate desuccinylase (EC 3.5.1.96))
../bin/blast/fastacmd -i /tmp/list.11719.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11719.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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