Align Ribokinase (EC 2.7.1.15) (characterized)
to candidate Pf6N2E2_165 Ribokinase (EC 2.7.1.15)
Query= reanno::pseudo5_N2C3_1:AO356_00950 (304 letters) >FitnessBrowser__pseudo6_N2E2:Pf6N2E2_165 Length = 304 Score = 554 bits (1427), Expect = e-162 Identities = 287/304 (94%), Positives = 294/304 (96%) Query: 1 MPAKVVVIGSLNMDLVTRAPRLPRGGETLIGESFATIPGGKGANQAVAAARLGAQVSMVG 60 MPAKVVVIGSLNMDLVTRAPRLPRGGETLIGESF+TIPGGKGANQAVAAARLGA+VSMVG Sbjct: 1 MPAKVVVIGSLNMDLVTRAPRLPRGGETLIGESFSTIPGGKGANQAVAAARLGAEVSMVG 60 Query: 61 CVGDDAYGEQLRGALLAEGIDCQAVRVEQGSSGVALIVVDDNSQNAIVIVAGANGALTAE 120 CVG+DAYGEQLRG LLAEGIDCQAV V +G+SGVALIVVDDNSQNAIVIVAGANGALTAE Sbjct: 61 CVGNDAYGEQLRGGLLAEGIDCQAVSVVEGASGVALIVVDDNSQNAIVIVAGANGALTAE 120 Query: 121 VLDGVDDVLQSADVIICQLEVPDATVGHALKRGRALGKIVILNPAPASHALPADWYACID 180 VLD VD+VLQSADVIICQLEVPDATVGHALKR R LGKIVILNPAPASH LPADWYACID Sbjct: 121 VLDSVDEVLQSADVIICQLEVPDATVGHALKRARELGKIVILNPAPASHTLPADWYACID 180 Query: 181 YLIPNESEAAVLSGLAVDSLETAEAAAAHLIAAGAGKVIVTLGAQGLMFANGASFEHFPA 240 YL+PNESEAAVLSGLAVDSLETAEAAAAHLIAAGAGKVIVTLGAQGLMFANG SFEHFPA Sbjct: 181 YLVPNESEAAVLSGLAVDSLETAEAAAAHLIAAGAGKVIVTLGAQGLMFANGVSFEHFPA 240 Query: 241 PRVKAVDTTAAGDTFVGGFAAALACGKSEVDAIRFGQVAAALSVTRAGAQPSIPTLLEVQ 300 PRVKAVDTTAAGDTFVGGFAAALA GKSEVDAIRFGQ AAALSVTRAGAQPSIPTLLEVQ Sbjct: 241 PRVKAVDTTAAGDTFVGGFAAALASGKSEVDAIRFGQAAAALSVTRAGAQPSIPTLLEVQ 300 Query: 301 AFKS 304 AFKS Sbjct: 301 AFKS 304 Lambda K H 0.318 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 484 Number of extensions: 12 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 304 Length of database: 304 Length adjustment: 27 Effective length of query: 277 Effective length of database: 277 Effective search space: 76729 Effective search space used: 76729 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate Pf6N2E2_165 (Ribokinase (EC 2.7.1.15))
to HMM TIGR02152 (rbsK: ribokinase (EC 2.7.1.15))
../bin/blast/fastacmd -i /tmp/list.13271.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13271.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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