Align dihydrolipoyl dehydrogenase; EC 1.8.1.4 (characterized)
to candidate Pf6N2E2_5857 Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)
Query= CharProtDB::CH_015561 (478 letters) >FitnessBrowser__pseudo6_N2E2:Pf6N2E2_5857 Length = 481 Score = 836 bits (2160), Expect = 0.0 Identities = 432/481 (89%), Positives = 449/481 (93%), Gaps = 3/481 (0%) Query: 1 MTQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYTDAEGKLALGGTCLNVGCIPSKAL 60 MTQKFDVVVIGAGPGGYVAAIKAAQLGL TACIEKYTD EGKLALGGTCLNVGCIPSKAL Sbjct: 1 MTQKFDVVVIGAGPGGYVAAIKAAQLGLTTACIEKYTDKEGKLALGGTCLNVGCIPSKAL 60 Query: 61 LDSSWKYKEAKESFNVHGI---STGEVKMDVAAMVGRKAGIVKNLTGGVATLFKANGVTS 117 LDSSWK+ EA++ +HGI + V +DV AMVGRKA IVK LT GVATLFKANGVTS Sbjct: 61 LDSSWKFHEAQDGLAIHGIGGVNRENVTIDVPAMVGRKANIVKGLTSGVATLFKANGVTS 120 Query: 118 IQGHGKLLAGKKVEVTKADGTTEVIEAENVILASGSRPIDIPPAPVDQNVIVDSTGALEF 177 IQGHGKLL GKKVEVTK DG+ EVIEAENVILA GSRPIDIPPAPVDQNVIVDSTGALEF Sbjct: 121 IQGHGKLLMGKKVEVTKPDGSVEVIEAENVILAPGSRPIDIPPAPVDQNVIVDSTGALEF 180 Query: 178 QAVPKRLGVIGAGVIGLELGSVWARLGAEVTVLEALDTFLMAADTAVSKEAQKTLTKQGL 237 Q+VPKRLGVIGAGVIGLELGSVW+RLGA+VTVLEALDTFLMAAD AVSKEA KTLTKQGL Sbjct: 181 QSVPKRLGVIGAGVIGLELGSVWSRLGAQVTVLEALDTFLMAADAAVSKEALKTLTKQGL 240 Query: 238 DIKLGARVTGSKVNGNEVEVTYTNAEGEQKITFDKLIVAVGRRPVTTDLLAADSGVTIDE 297 DIKLGARVTGSKVNG EV V YT+A GEQ ITFDKLIVAVGRRPVTTDLLAADSGV +DE Sbjct: 241 DIKLGARVTGSKVNGEEVVVNYTDANGEQTITFDKLIVAVGRRPVTTDLLAADSGVELDE 300 Query: 298 RGYIFVDDYCATSVPGVYAIGDVVRGMMLAHKASEEGIMVVERIKGHKAQMNYDLIPSVI 357 RG+I VDD+CAT+VPGV+AIGDVVRGMMLAHKASEEGIMVVERIKGHKAQ+NYDLIPSVI Sbjct: 301 RGFIKVDDFCATTVPGVFAIGDVVRGMMLAHKASEEGIMVVERIKGHKAQINYDLIPSVI 360 Query: 358 YTHPEIAWVGKTEQALKAEGVEVNVGTFPFAASGRAMAANDTGGFVKVIADAKTDRVLGV 417 YTHPEIAWVGKTEQ LKAEGVEVNVGTFPFAASGRAMAANDTGGFVKVIADAKTDRVLGV Sbjct: 361 YTHPEIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTGGFVKVIADAKTDRVLGV 420 Query: 418 HVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGGAIHVANRKK 477 HVIGPSAAELVQQGAI MEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGGAIHVANRKK Sbjct: 421 HVIGPSAAELVQQGAIGMEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGGAIHVANRKK 480 Query: 478 R 478 R Sbjct: 481 R 481 Lambda K H 0.316 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 901 Number of extensions: 20 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 478 Length of database: 481 Length adjustment: 34 Effective length of query: 444 Effective length of database: 447 Effective search space: 198468 Effective search space used: 198468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (24.3 bits)
Align candidate Pf6N2E2_5857 (Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4))
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.26492.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26492.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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