GapMind for catabolism of small carbon sources

 

Alignments for a candidate for pta in Desulfovibrio vulgaris Hildenborough

Align phosphate acetyltransferase (EC 2.3.1.8) (characterized)
to candidate 208543 DVU3029 phosphate acetyltransferase

Query= metacyc::GIO2-991-MONOMER
         (792 letters)



>MicrobesOnline__882:208543
          Length = 704

 Score =  477 bits (1228), Expect = e-139
 Identities = 296/724 (40%), Positives = 426/724 (58%), Gaps = 40/724 (5%)

Query: 61  DTLFLSDISLVGQRTPLLLGFFNYFERHLPHVGFFEPIAAEALASSELRIDRHVELVYKV 120
           + L+++       ++ ++LG      R +  V FF PI  +A  S+++R D  + L+ + 
Sbjct: 3   NNLYITATESKSGKSAVVLGMMQLLLRDVRKVAFFRPIINQA--STDVR-DHDINLILRH 59

Query: 121 FNLKGDVRAMTGVQDAEAARMIANGQHSELLDKIYSQYASYKEGQDLVLVEGPGPLMGGT 180
           F L             +A  +I NGQH+ LLD I  +Y   ++  D VL EG   L    
Sbjct: 60  FGLDIAYEDTYAYSLQDARELINNGQHATLLDNILKKYKKLEDAYDFVLCEGTDFLGKDA 119

Query: 181 ----ELDAQIAAALNAPVLMTMTGQPNATVADYYNRAMVKRQVFLD----HHVEVLGLVM 232
               EL+A IAA L  PV++   GQ  A         +   Q+ +D      ++V+  V+
Sbjct: 120 AFEFELNADIAANLGCPVMVVANGQQKAA-----RELIASTQLTIDLLDEKGLDVVTAVI 174

Query: 233 NG--LPRQSHAILSGQLRDKFAAAGLPFAGAIPTDIMLRNVRLDEVQTAMGAQRLYGDSL 290
           N   +       +   L  K   +       +P +  L    +++V+  +GAQ LYG   
Sbjct: 175 NRATVTEAEREEIIKSLECKVNCSNPLAVYVLPEESTLGKPTMNDVKKWLGAQVLYGHGR 234

Query: 291 LTDVEFDDVVVASQRLEELLEILAERPMGRPLVVTSADRLDIVLGLLAAQLSVSGPGVAG 350
           L D   DD ++A+ ++   L+ +++      LV+T  DR DI+L  LA++LS + P ++G
Sbjct: 235 L-DTLVDDYIIAAMQIGNFLDYVSQGC----LVITPGDRSDIILSSLASRLSTAYPDISG 289

Query: 351 ILLTQAGSARSGRNYARDTIDRIFAGLSSSGLYKGSLLPVLVTDMPLRDAIRKLDNLDAA 410
           +LLT  G      N     + R+  G      + G  +P+L         I+ L+ L   
Sbjct: 290 LLLT--GGLEPAAN-----VHRLIEG------WTGVPIPILSVKDHTYKTIQTLNELYGK 336

Query: 411 ILPSSTRKISQCKRLFEQYVDANAVVARLQNMVRPNRMTPKMFMHTLKSMCNATPQHIVL 470
           I P + RKI+    LFE+++D++ + +RL N  + +R+TPKMF   L          IVL
Sbjct: 337 IEPDNDRKINTALALFERHIDSSELGSRLINR-KSSRITPKMFEFNLIEKAKRNRMRIVL 395

Query: 471 PESEDKRVLAAAADVVQRGLAKITLLGDPTTILAEAAKLGLDLSGCNIHNPNTSDRFDKY 530
           PE  ++R+L AA  +V+R +A I LLGD  T+ +    LGLD+ G  I  PN S +FD+Y
Sbjct: 396 PEGAEERILRAADILVRREVADIILLGDANTVGSRIGDLGLDMDGVQIVQPNLSPKFDEY 455

Query: 531 VDMLVEARKKKGMTREVAADTLHGDVNFFATMMIVAGDADGMVSGAVHTTASTVRPALQV 590
           V    E RKKKG++ E A D ++ D  +F TMM+  GDADGMVSGA++TTA T+RPA + 
Sbjct: 456 VAAYHECRKKKGISMEQARDMMN-DPTYFGTMMVHKGDADGMVSGAINTTAHTIRPAFEF 514

Query: 591 LKS-PDTPLVSSVFIMCLPDRVVVYGDCAVNVNPSAADLAQIAITSNDTAAAFGIEPRVA 649
           +K+ P   +VSSVF+MCL DRV+V+GDCAVN NP+A  LA+IAI+++ TA  FG++PRVA
Sbjct: 515 IKTKPGVSIVSSVFLMCLKDRVLVFGDCAVNPNPTAEQLAEIAISASHTARIFGVDPRVA 574

Query: 650 MLSYSTLGSGSGPDVQKVSEAVAIVKQRRPDIKVEGPIQYDAAIDPKVAAVKVQGLSEVA 709
           MLSYST  SG G DV+KV EA  I K+R P++ +EGP+QYDAAID  VA  K+ G S VA
Sbjct: 575 MLSYSTGSSGKGADVEKVIEATRIAKERAPELLLEGPLQYDAAIDMDVARTKLPG-STVA 633

Query: 710 GKATVFIFPDLNTGNNTYKAVQQSTGAIAMGPVMQGLLRPVNDLSRGCTVPDIINTICVT 769
           G+ATVFIFPDLNTGNNTYKAVQ++ GA+A+GPV+QGL +PVNDLSRGCTV DI+NT+ +T
Sbjct: 634 GQATVFIFPDLNTGNNTYKAVQRAAGAVAIGPVLQGLNKPVNDLSRGCTVADIVNTVAIT 693

Query: 770 SIQA 773
           +IQA
Sbjct: 694 AIQA 697


Lambda     K      H
   0.320    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1191
Number of extensions: 62
Number of successful extensions: 10
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 792
Length of database: 704
Length adjustment: 40
Effective length of query: 752
Effective length of database: 664
Effective search space:   499328
Effective search space used:   499328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Align candidate 208543 DVU3029 (phosphate acetyltransferase)
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.10986.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10986.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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