Align L-lactate dehydrogenase (EC 1.1.1.27) (characterized)
to candidate 209544 DVU0600 L-lactate dehydrogenase
Query= BRENDA::B1A4R6 (311 letters) >MicrobesOnline__882:209544 Length = 309 Score = 286 bits (733), Expect = 3e-82 Identities = 139/302 (46%), Positives = 210/302 (69%) Query: 1 MSKISVIGSGFVGATTAYTLALSGIAKTIVLIDINKDKAEGDALDISHGVPFISPVEVYA 60 M++I+VIG G VG AY A+ +A IVLID N +AEG+++D++ + + PV++ + Sbjct: 1 MNRIAVIGVGNVGMAFAYAAAIKRLANDIVLIDANAARAEGESMDLADAMALVGPVQIRS 60 Query: 61 GDYGDTVGSDIIIITAGAAQKPGETRLDLVKKNTMIFKDIVAKLIKVNDTAIYLIVTNPV 120 G Y G+ I+++TAGA Q PG++RLDLV+ N I +DI+ +++ D +Y++ TNPV Sbjct: 61 GGYEQCEGARIVVVTAGAKQMPGQSRLDLVRVNAGITRDILTAVMQYADDPLYIMATNPV 120 Query: 121 DILTYVTYKISGLPYGRVLGSGTVLDSARFRYLLSKHCNIDPRNIHGYIIGEHGDSELAA 180 D+LT+V ++G+ GRV+GSGTVLDSARFR +++ +D R +H +I+GEHGDSE+A Sbjct: 121 DVLTHVARTVTGVAPGRVIGSGTVLDSARFRGHVAEILGVDVRGVHAHIVGEHGDSEVAL 180 Query: 181 WSITNIAGIPIDNYCNLCGKVCEKDFREEIFNNVVRAAYTIIEKKGATYYAVALAVRRIV 240 WS N++GIP+ C G + FRE+ +V AAY II +KGAT Y + +++ RIV Sbjct: 181 WSRANVSGIPVAEMCARRGIAYDAAFREKALGHVRHAAYEIIGRKGATGYGIGMSLCRIV 240 Query: 241 EAILRDENSILTVSSPLTGQYGVTDVALSLPSVVGRNGIVNILELPLSQEEIAAFRRSAE 300 EAIL DE+S+LTVS P+ G YG+ DV+LSLP V+G +GI +L+ P++++E AA SA Sbjct: 241 EAILHDEHSVLTVSCPVAGHYGLGDVSLSLPCVIGSDGIEEVLDAPIAEDEQAALAASAR 300 Query: 301 II 302 ++ Sbjct: 301 VL 302 Lambda K H 0.319 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 280 Number of extensions: 6 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 311 Length of database: 309 Length adjustment: 27 Effective length of query: 284 Effective length of database: 282 Effective search space: 80088 Effective search space used: 80088 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate 209544 DVU0600 (L-lactate dehydrogenase)
to HMM TIGR01771 (L-lactate dehydrogenase (EC 1.1.1.27))
../bin/blast/fastacmd -i /tmp/list.23641.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23641.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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