Align acetate-CoA ligase (EC 6.2.1.1) (characterized)
to candidate 408300 DVU0748 acetyl-CoA synthetase
Query= BRENDA::Q2XNL6 (634 letters) >MicrobesOnline__882:408300 Length = 648 Score = 700 bits (1806), Expect = 0.0 Identities = 334/638 (52%), Positives = 454/638 (71%), Gaps = 14/638 (2%) Query: 8 LLEEKRVFKPHYTVVEEAHIKNWE---AELEKGKDHENYWAEKAERLEWFRKWDRVLDES 64 LL E+RVF+P VV +A + + A + G +W E AE LEWFR+WD VLD+S Sbjct: 11 LLREERVFRPLPRVVADAVVNPQDVARAREQAGTAPLAFWEEAAEELEWFRRWDGVLDDS 70 Query: 65 NRPFYRWFVNGKINMTYNAVDRWLDTDKRNQVAILYVNERGDERKLTYYELYREVSRTAN 124 N PF RWF N+ +NA+DR ++T R+++A+++ E GD R+ TY++LYREV+R AN Sbjct: 71 NAPFMRWFPGALCNIVHNALDRHIETSNRHRLALIWEGEPGDSRRFTYFDLYREVNRLAN 130 Query: 125 ALKSLGIKKGDAVALYLPMCPELVVSMLACAKIGAVHSVIYSGLSVGALVERLNDARAKI 184 A++SLG+ KGD V +Y+P PE V +MLACAKIGAVHS ++ G S +L +R+ DAR + Sbjct: 131 AMRSLGVTKGDRVVIYMPPLPETVFAMLACAKIGAVHSTVFGGFSARSLCDRVEDARPTL 190 Query: 185 IITADGTYRRGGVIKLKPIVDEAILQCPT-----IETTVVVKHTDIDIEMSDISGREMLF 239 ++T DG YR G V+ LKP+ D+A+ + VVV ++ M D GR++ + Sbjct: 191 LLTVDGFYRNGRVVPLKPVADDAVDALSPEARAGLHHVVVVHRAHLETPMRD--GRDIWY 248 Query: 240 DKLIEGEGDRCDAEEMDAEDPLFILYTSGSTGKPKGVLHTTGGYMVGVASTLEMTFDIHN 299 L+ G+ E + A DPLF+LYTSG+TGKPKG++H+ GGYMVGV T+ FD+ Sbjct: 249 HDLVRGQSTEALTEVLSANDPLFVLYTSGTTGKPKGLVHSHGGYMVGVHRTMRWVFDVRP 308 Query: 300 GDLWWCTADIGWITGHSYVVYGPLLLGTTTLLYEGAPDYPDPGVWWSIVEKYGVTKFYTA 359 D++WCTA+ GWITGHSY VYGPL+ GTTT+LYEG P YP+ G WS+VE++GVT YT Sbjct: 309 TDIFWCTAEPGWITGHSYGVYGPLMAGTTTVLYEGHPLYPEAGRLWSMVERWGVTILYTV 368 Query: 360 PTAIRHLMRFGDKHPKRYNLESLKILGTVGEPINPEAWMWYYRNIGREKCPIIDTWWQTE 419 PT IR LMRFG +P R+++ +L++L TVGEPI+PE W+W+YR IGR +CP++DTWWQTE Sbjct: 369 PTVIRMLMRFGPLYPARHDITTLRLLATVGEPISPETWVWFYRTIGRGRCPVLDTWWQTE 428 Query: 420 TGMHLIAPLPVTPLKPGSVTKPLPGIEADVVDENGDPVPLGKGGFLVIRKPWPAMFRTLF 479 TGM +++PLPV+ LKPGSV +PLPG++ D+VD G PVP G+GG LV++ PWPAM +F Sbjct: 429 TGMIMVSPLPVSALKPGSVARPLPGVDVDIVDGEGAPVPPGRGGLLVVKNPWPAMACGVF 488 Query: 480 NDEQRYIDVYWKQIPGGVYTAGDMARKDEDGYFWIQGRSDDVLNIAGHRIGTAEVESVFV 539 D++ + +YW++ PG Y GD+AR+D+DGY WIQGR+DDV+ IAGHRIGTAE+E+ Sbjct: 489 GDDEAFRRLYWERFPGW-YCTGDVARRDDDGYIWIQGRADDVILIAGHRIGTAEMEAALA 547 Query: 540 AHPAVAEAAVIGKADPIKGEVIKAFLILKKGHKLNA---ALIEELKRHLRHELGPVAVVG 596 +HPAVAE AVIG D +KGEV KAF++L+ + A AL L H+R ELGPVAV+ Sbjct: 548 SHPAVAECAVIGVPDRLKGEVGKAFVVLRDTEEAAAEEQALATSLVGHVRRELGPVAVIR 607 Query: 597 EMVQVDSLPKTRSGKIMRRILRAREEGEDLGDTSTLEE 634 ++V + LP+ RSGKIMRRILR+ E G + GD STLE+ Sbjct: 608 DVVFREGLPRNRSGKIMRRILRSEEMGVETGDLSTLED 645 Lambda K H 0.319 0.138 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1335 Number of extensions: 63 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 634 Length of database: 648 Length adjustment: 38 Effective length of query: 596 Effective length of database: 610 Effective search space: 363560 Effective search space used: 363560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate 408300 DVU0748 (acetyl-CoA synthetase)
to HMM TIGR02188 (acs: acetate--CoA ligase (EC 6.2.1.1))
../bin/blast/fastacmd -i /tmp/list.13019.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13019.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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