Align UDP-glucose 4-epimerase; EC 5.1.3.2; Galactowaldenase; UDP-galactose 4-epimerase (uncharacterized)
to candidate 206802 DVU1360 UDP-glucose 4-epimerase
Query= curated2:Q9KDV3 (334 letters) >MicrobesOnline__882:206802 Length = 331 Score = 334 bits (856), Expect = 2e-96 Identities = 163/319 (51%), Positives = 212/319 (66%) Query: 3 ILVTGGAGYIGSHTVLFLLEQGEQVIVLDNLQKGHAGALSDVTFYHGDIRDDQLLDTIFT 62 +LV GGAGYIGSH V L+E G I+ DNL GHA ++ DV GD+ D Q L +F Sbjct: 10 VLVCGGAGYIGSHMVRALVEHGYVPIIFDNLSTGHAESVGDVDLVRGDLLDRQALRRLFA 69 Query: 63 THSIDTVIHFAANSLVGESVKQPIEYYENNVIGTHTLLKKMLEHDVKKIVFSSTAATYGE 122 HS D V+HF+A SLVGES+ P Y+ NNV+GT LL+ M E V ++VFSS+AA +G Sbjct: 70 EHSFDAVMHFSAKSLVGESMTDPGIYFVNNVVGTINLLEAMREAGVSRLVFSSSAAVFGN 129 Query: 123 PVQIPIQESDPTIPTNPYGETKLAIEKMFHWCQEAYGLQYVCLRYFNAAGADPNGRIGED 182 P+ I E P P NPYG +KL IE+ AYG++ V LRYFNAAGAD G IGE Sbjct: 130 PLTARIAEDHPRQPVNPYGRSKLMIEQALRDYANAYGMRSVSLRYFNAAGADEAGDIGES 189 Query: 183 HSPESHLIPIVLQVALGQRERVAIFGDDYQTEDGSCIRDYIHVMDLANAHYLACEHLRKD 242 H PE+HLIP VL+ ALG + IFGDDY T DG+C+RDYIHV DL +AH A +++ Sbjct: 190 HKPETHLIPNVLRAALGTGPELKIFGDDYDTPDGTCVRDYIHVADLCDAHLRALSYMQLK 249 Query: 243 GQSGSFNLGNGKGFSVKEVIEVCRQVTGHPIPAEIAPRRSGDPASLIASSEKAQTILGWE 302 + +FNLGNG GFSVK+V+E +VTG +P +APRR GDPA L+A S A+ LGW+ Sbjct: 250 PGAHAFNLGNGNGFSVKQVVEAAWRVTGRDVPHSMAPRRPGDPAWLVADSTLAERELGWK 309 Query: 303 PKYPSLETMVEHAWNWHKE 321 P + ++ +++ AW WH++ Sbjct: 310 PSFTDIDAIIDSAWRWHQK 328 Lambda K H 0.317 0.135 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 355 Number of extensions: 10 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 334 Length of database: 331 Length adjustment: 28 Effective length of query: 306 Effective length of database: 303 Effective search space: 92718 Effective search space used: 92718 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate 206802 DVU1360 (UDP-glucose 4-epimerase)
to HMM TIGR01179 (galE: UDP-glucose 4-epimerase GalE (EC 5.1.3.2))
../bin/blast/fastacmd -i /tmp/list.1583.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1583.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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