Align Malate synthase G (EC 2.3.3.9) (characterized)
to candidate 206126 DVU0701 malate synthase G
Query= reanno::psRCH2:GFF353 (726 letters) >MicrobesOnline__882:206126 Length = 729 Score = 873 bits (2255), Expect = 0.0 Identities = 421/728 (57%), Positives = 538/728 (73%), Gaps = 6/728 (0%) Query: 1 MTERVQVGGLQVAKVLYDFVNNEAIPGTGVDAAAFWAGADSVIHDLAPKNRALLAKRDDL 60 MT R++ GGL VA+ L+ + E +PGTG+ + FWAG + ++ L P+NR LLA+RD++ Sbjct: 1 MTGRIREGGLAVAEPLHRCIEREILPGTGISPSIFWAGLEELVGTLGPRNRELLARRDNM 60 Query: 61 QAQIDAWHQARAGQAHDAVAYKSFLQEIGYLLPEAEDFQATTENVDEEIARMAGPQLVVP 120 QA IDAWH+ G+ HDA AY+ FL++I YLLP +D T+ VD E+A +AGPQLVVP Sbjct: 61 QAAIDAWHKEHQGRPHDAAAYRRFLEDIRYLLPAPQDLAVETQGVDPEVATIAGPQLVVP 120 Query: 121 IMNARFALNAANARWGSLYDALYGTDAISEADGASKGPGYNEIRGNKVIAYARNFLNEAA 180 + N R+ALNA NARWGSLYDALYG+D I+++DGA++G YN +RG KV+AYA FL+ Sbjct: 121 VTNPRYALNAVNARWGSLYDALYGSDVIADSDGAARGAAYNPLRGAKVVAYAAAFLDRTF 180 Query: 181 PLETGSHVDSTGYRIEGG----KLVVSLKDGSTTGLKNPAQLQGFQGEASAPIAVLLKNN 236 PL H D Y + G KL DG+ TGL +P G+ G P VLL+NN Sbjct: 181 PLAGARHADVVRYELTGPPVGRKLSALCADGTVTGLLHPDAFAGYTG-GERPTTVLLRNN 239 Query: 237 GIHFEIQIDPASPIGQTDAAGVKDILMESALTTIMDCEDSIAAVDADDKTVVYRNWLGLM 296 G+H E+Q D P+G AG+KD+++ESA+TTI+DCEDS+A VDA+DK + YRN LGL Sbjct: 240 GLHVELQFDRRHPVGAAHPAGLKDVVLESAVTTILDCEDSVATVDAEDKALAYRNLLGLF 299 Query: 297 KGDLVEELEKGGKRITRAMNPDRVYTKADGNGELTLHGRSLLFIRNVGHLMTNDAILDKE 356 +GDL +KGG+ + R + DR YT A G L GRSL+ +RNVG LMT DA+LD Sbjct: 300 RGDLETSFDKGGRSVFRRLAADRTYT-APGGAAYALPGRSLMLVRNVGLLMTTDAVLDAA 358 Query: 357 GNEVPEGIMDGLFTSLIAVHNLNGNTSRKNTRTGSMYIVKPKMHGPEEVAFATELFGRVE 416 G E+PEGI+DGL T+ I +H+L G +N+ GS+YIVKPK+HGPEEVAF E F R+E Sbjct: 359 GQEIPEGILDGLVTACIGLHDLRGAGRHRNSGAGSVYIVKPKLHGPEEVAFVCEQFRRIE 418 Query: 417 DVLGLPRNTLKVGIMDEERRTTINLKACIKEARERVVFINTGFLDRTGDEIHTSMEAGPM 476 D+LG+ RNTLK+G+MDEERRTT+NL CI+ A +R++FINTGFLDRTGDEIHT MEAGP+ Sbjct: 419 DILGMARNTLKMGVMDEERRTTLNLAECIRVASQRIIFINTGFLDRTGDEIHTCMEAGPV 478 Query: 477 VRKAAMKAEKWISAYENNNVDVGLACGLQGKAQIGKGMWAMPDLMAAMLEQKVGHPMAGA 536 VRK MKA++W+ AYE+ NVD GLA G GKAQIGKGMW PD +A M+ K HP AGA Sbjct: 479 VRKNDMKAQRWMLAYEDWNVDTGLAAGFGGKAQIGKGMWPKPDRLAEMVATKGAHPRAGA 538 Query: 537 NTAWVPSPTAATLHAMHYHKIDVQARQVELAKREKASIDDILTIPLAQDTNWSEEEKRNE 596 N AWVPSPTAATLHA+HYH++DV ARQ ELA +AS+DD+L +PL + S E R E Sbjct: 539 NCAWVPSPTAATLHALHYHEVDVFARQRELAGCHRASLDDLLALPLMGEARPSPAEVREE 598 Query: 597 LDNNSQGILGYMVRWVEQGVGCSKVPDINDIALMEDRATLRISSQHVANWMRHGVVTKDQ 656 L+NN+Q ILGY+VRWVE G+GCSKVPDI+D+ LMEDRATLRISSQH+ANW+RHG+ T+D+ Sbjct: 599 LENNAQSILGYVVRWVEMGIGCSKVPDIHDVGLMEDRATLRISSQHIANWLRHGICTEDE 658 Query: 657 VVESLKRMAPVVDRQNQGDPLYRPMAPDFDNSVAFQAALELVLEGTKQPNGYTEPVLHRR 716 V + + RMA VVDRQN+ +P YRPM+ D +SVAF+AA +LV EG +QPNGYTEP+LH R Sbjct: 659 VRDVMLRMATVVDRQNKDEPGYRPMSADPGSSVAFRAACDLVFEGARQPNGYTEPILHAR 718 Query: 717 RREFKAKN 724 RRE KA++ Sbjct: 719 RREVKARS 726 Lambda K H 0.316 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1384 Number of extensions: 55 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 726 Length of database: 729 Length adjustment: 40 Effective length of query: 686 Effective length of database: 689 Effective search space: 472654 Effective search space used: 472654 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.8 bits)
Align candidate 206126 DVU0701 (malate synthase G)
to HMM TIGR01345 (glcB: malate synthase G (EC 2.3.3.9))
../bin/blast/fastacmd -i /tmp/list.32106.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32106.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.