Align cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) (characterized)
to candidate WP_011384541.1 AMB_RS10825 cyclohexa-1,5-dienecarbonyl-CoA hydratase
Query= BRENDA::O87873 (258 letters) >NCBI__GCF_000009985.1:WP_011384541.1 Length = 259 Score = 337 bits (865), Expect = 1e-97 Identities = 174/254 (68%), Positives = 204/254 (80%) Query: 5 SSPLKVWLERDGSLLRLRLARPKANIVDAAMIAAMRQALGEHLQAPALRAVLLDAEGPHF 64 S+ LKVW +R+G LLRLRL+RPKANIVDA MIAA+ ALG+ + ALRAVL+D EGPHF Sbjct: 6 SNCLKVWKDREGKLLRLRLSRPKANIVDAEMIAALSAALGDAHEDSALRAVLIDHEGPHF 65 Query: 65 SFGASVDEHMPDQCAQMLKSLHGLVREMLDSPVPILVALRGQCLGGGLEVAAAGNLLFAA 124 SFGASV EHMPDQCA ML SLH LV M+D P+PILVA+RGQCLGGGLEVA AG+++F + Sbjct: 66 SFGASVAEHMPDQCAAMLASLHKLVIAMVDFPLPILVAVRGQCLGGGLEVALAGHMMFVS 125 Query: 125 PDAKFGQPEIRLGVFAPAASCLLPPRVGQACAEDLLWSGRSIDGAEGHRIGLIDVLAEDP 184 PDAK GQPEI LGVFAPAASCLLP R+ + AEDLL+SGRSIDGAE R+G+ + + +DP Sbjct: 126 PDAKLGQPEIVLGVFAPAASCLLPERMPRVAAEDLLYSGRSIDGAEAARLGIANAVVDDP 185 Query: 185 EAAALRWFDEHIARLSASSLRFAVRAARCDSVPRIKQKLDTVEALYLEELMASHDAVEGL 244 E AAL WFD A+ SA+SLRFAV+AAR R+K K+ VEALYL LMA+HDAVEGL Sbjct: 186 ENAALAWFDNGPAKHSAASLRFAVKAARLGMNERVKAKIAEVEALYLNGLMATHDAVEGL 245 Query: 245 KAFLEKRSANWENR 258 AFLEKR A WE+R Sbjct: 246 NAFLEKRPALWEDR 259 Lambda K H 0.321 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 277 Number of extensions: 13 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 258 Length of database: 259 Length adjustment: 24 Effective length of query: 234 Effective length of database: 235 Effective search space: 54990 Effective search space used: 54990 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.7 bits)
Align candidate WP_011384541.1 AMB_RS10825 (cyclohexa-1,5-dienecarbonyl-CoA hydratase)
to HMM TIGR03189 (cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100))
../bin/blast/fastacmd -i /tmp/list.1067.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1067.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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