GapMind for catabolism of small carbon sources

 

Alignments for a candidate for glk in Magnetospirillum magneticum AMB-1

Align glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) (characterized)
to candidate WP_011384511.1 AMB_RS10655 glucokinase

Query= ecocyc::GLUCOKIN-MONOMER
         (321 letters)



>NCBI__GCF_000009985.1:WP_011384511.1
          Length = 321

 Score =  259 bits (663), Expect = 5e-74
 Identities = 146/311 (46%), Positives = 183/311 (58%), Gaps = 4/311 (1%)

Query: 1   MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHK--VEVKD 58
           M++  LV D+GGT+AR AL     GE          DY      I+ YL EH   V  K 
Sbjct: 1   MSQMVLVADIGGTHARFALMG-PDGEAVNPVVLRCADYDGPAPAIKAYLAEHAGGVAPKG 59

Query: 59  GCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQ 118
           G  A+A  I GD + +TN  W FSIAE ++ +G   LE++NDFTAV++++  LK EHL+ 
Sbjct: 60  GAFAVASVIDGDRIELTNSPWRFSIAETRQAVGLQRLEVVNDFTAVALSVRHLKPEHLMS 119

Query: 119 FGGAEPVEGKPIAVYGAGTGLGVAHLV-HVDKRWVSLPGEGGHVDFAPNSEEEAIILEIL 177
            GG  P  G PIAV G GTGLGV+ L+      W +L  EGGHV  A  +E EA IL+ L
Sbjct: 120 VGGGMPEAGLPIAVLGPGTGLGVSALIPSASGEWTALATEGGHVTMAAATEREARILDRL 179

Query: 178 RAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDITERALADSCTDCRRALSLF 237
           R +  HVSAERVLSG GLVNLY+A+            P  IT+R L  SC   R A+ +F
Sbjct: 180 RTQFDHVSAERVLSGQGLVNLYQAVAALSGHQAVFSTPDVITKRGLDGSCPVSREAVEVF 239

Query: 238 CVIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVY 297
             +MG   GNLAL+LG  GGVFIAGGI+PR  E F+ S FR  FE  GRF+ Y+  IP +
Sbjct: 240 FAMMGTVAGNLALSLGAKGGVFIAGGILPRMAEAFRLSSFRTRFEAHGRFQPYLAAIPTW 299

Query: 298 LIVHDNPGLLG 308
           LI H  P  +G
Sbjct: 300 LITHPLPAFVG 310


Lambda     K      H
   0.322    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 324
Number of extensions: 20
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 321
Length adjustment: 28
Effective length of query: 293
Effective length of database: 293
Effective search space:    85849
Effective search space used:    85849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_011384511.1 AMB_RS10655 (glucokinase)
to HMM TIGR00749 (glk: glucokinase (EC 2.7.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.20950.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20950.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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