Align Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 (characterized)
to candidate WP_011384224.1 AMB_RS09205 triose-phosphate isomerase
Query= SwissProt::Q8L1Z5 (254 letters) >NCBI__GCF_000009985.1:WP_011384224.1 Length = 251 Score = 227 bits (578), Expect = 2e-64 Identities = 119/248 (47%), Positives = 159/248 (64%), Gaps = 7/248 (2%) Query: 6 RPFIAGNWKMNGTGESLGELRAIAAGISSDLGRLF---EALICVPATLLSRAFDILGGEN 62 R IAGNWKMNG + A+A G++ L + L+C P TL++ D L G Sbjct: 5 RKLIAGNWKMNGLK---ADGLALAKGLADKLASASPNCDMLVCPPFTLIAPVADALAGSK 61 Query: 63 ILLGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWR 122 + +GGQ+CH G +TGD S ML + G + I+GHSERRT + E+D +V+AK AA Sbjct: 62 LAVGGQDCHAKTSGAHTGDTSPAMLADLGCKYAIVGHSERRTDHAETDNVVKAKAAAALS 121 Query: 123 AGLVALICVGETLEERKSNKVLDVLTRQLEGSLPDGATAENIIIAYEPVWAVGTGNTATS 182 AGLVA++C+GETL +R + + ++V QL GSLP+GA A N +IAYEPVWA+GTG AT Sbjct: 122 AGLVAIVCIGETLAQRDAGQTIEVNRSQLNGSLPEGANAANTVIAYEPVWAIGTGRVATP 181 Query: 183 ADVAEVHAFIHHKMHSRFG-DEGAKIRLLYGGSVKPSNAFELLSTAHVNGALIGGASLKA 241 A EVHA I ++ G +E K+R+LYGGS+KP NA ELL+ V+G LIGGA+LK Sbjct: 182 AQAQEVHAAIRAELARLVGAEEAGKMRILYGGSMKPDNAKELLALPDVDGGLIGGAALKV 241 Query: 242 IDFLTICD 249 DF I + Sbjct: 242 ADFWAIAE 249 Lambda K H 0.320 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 224 Number of extensions: 11 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 254 Length of database: 251 Length adjustment: 24 Effective length of query: 230 Effective length of database: 227 Effective search space: 52210 Effective search space used: 52210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 46 (22.3 bits)
Align candidate WP_011384224.1 AMB_RS09205 (triose-phosphate isomerase)
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.10575.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10575.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.