Align Dihydrolipoyl dehydrogenase, mitochondrial; Dihydrolipoamide dehydrogenase; Glycine cleavage system L protein; Pyruvate dehydrogenase complex E3 subunit; E3; PDC-E3; EC 1.8.1.4 (characterized)
to candidate WP_011386317.1 AMB_RS20050 dihydrolipoyl dehydrogenase
Query= SwissProt::P31023 (501 letters) >NCBI__GCF_000009985.1:WP_011386317.1 Length = 469 Score = 580 bits (1496), Expect = e-170 Identities = 285/462 (61%), Positives = 352/462 (76%) Query: 39 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAK 98 DVVIIGGGPGGYVAAI+AAQLG KT CIEKRG+LGGTCLNVGCIPSKALL +SH YH A Sbjct: 7 DVVIIGGGPGGYVAAIRAAQLGLKTACIEKRGSLGGTCLNVGCIPSKALLTASHHYHAAA 66 Query: 99 HSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEIS 158 H + G+KV+ VE+D+A MMG KDK VS+ T+GIE LFKKNKVTY+ G G +P +I Sbjct: 67 HELGSFGIKVAKVEMDVAGMMGHKDKVVSDNTKGIEFLFKKNKVTYIVGAGAITAPGQIE 126 Query: 159 VDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGY 218 V +G + V KHI+IATGSDV LPGV IDE+ I+SSTGALALS+ PK +VVIG G Sbjct: 127 VTAKDGAKSNVAAKHIVIATGSDVTPLPGVEIDEEVIISSTGALALSKTPKHMVVIGGGV 186 Query: 219 IGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTS 278 IGLE+G+VWGR+G++VTVVEF I+P D E+ KQ QR L KQGM+FKL TKV G+ Sbjct: 187 IGLELGTVWGRLGAKVTVVEFLDRILPFNDGEVSKQMQRLLAKQGMEFKLGTKVTGIAKK 246 Query: 279 GDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFST 338 G +TVEP+AGG IEAD VLV+ GR P+T GL LDK+GV DK G + ++ F T Sbjct: 247 GKTATVTVEPAAGGAAEKIEADSVLVAIGRKPYTEGLGLDKVGVALDKRGFVQIDGHFRT 306 Query: 339 NVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKT 398 NV G+YAIGDV+ G MLAHKAEE+GVA E LAG+ GHV+Y+ +P VVYT PEVASVGKT Sbjct: 307 NVPGIYAIGDVVGGAMLAHKAEEEGVALAEILAGQHGHVNYEAIPAVVYTWPEVASVGKT 366 Query: 399 EEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIH 458 EEQ+K G+ Y+ GKFPF AN RA++++ +G VK++A TDK+LG HI+ PNAG+LI Sbjct: 367 EEQLKAEGIAYKAGKFPFTANGRARSMNEVDGFVKVLACATTDKVLGAHIVGPNAGDLIA 426 Query: 459 EAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIH 500 E +A+++ A+SEDIAR CHAHP + EA+KEA +A +P+H Sbjct: 427 EVVLAMEFGAASEDIARTCHAHPGLGEAVKEACLAVDGRPLH 468 Lambda K H 0.315 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 719 Number of extensions: 27 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 501 Length of database: 469 Length adjustment: 34 Effective length of query: 467 Effective length of database: 435 Effective search space: 203145 Effective search space used: 203145 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 52 (24.6 bits)
Align candidate WP_011386317.1 AMB_RS20050 (dihydrolipoyl dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.6666.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6666.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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