Align acetoacetate-CoA ligase (EC 6.2.1.16) (characterized)
to candidate WP_011383023.1 AMB_RS03000 acetoacetate--CoA ligase
Query= BRENDA::Q9Z3R3 (650 letters) >NCBI__GCF_000009985.1:WP_011383023.1 Length = 652 Score = 811 bits (2096), Expect = 0.0 Identities = 406/648 (62%), Positives = 487/648 (75%), Gaps = 6/648 (0%) Query: 7 LWVPDREIVERSPMAEFIDWCGERFGRSFADYDAFHDWSVSERGAFWTAVWEHCKVIGES 66 LW P +E E S +A F+ RF DY WSV FW+ VW+ +IG+ Sbjct: 5 LWQPSKERAEASALARFMRRADARFQVGATDYAGLWRWSVDRPDQFWSLVWDEVGIIGDR 64 Query: 67 GEKALV--DGDRMLDARFFPEARLNFAENLLRKTGSGDALIFRGEDKVSYRLTWDELRAL 124 + +V D RM AR+FPEARLNFAENLLR+ GDAL+F GEDKV RL++ ELRAL Sbjct: 65 PDGGVVVDDAGRMPGARWFPEARLNFAENLLRRDDGGDALVFWGEDKVKRRLSFAELRAL 124 Query: 125 VSRLQQALRAQGIGAGDRVAAMMPNMPETIALMLATASVGAIWSSCSPDFGEQGVLDRFG 184 VSRLQQAL A G+G GDRVA MPNMPE++A MLA AS+GAIWSS SPDFG QGVLDRFG Sbjct: 125 VSRLQQALSAAGVGKGDRVAGYMPNMPESVAFMLAVASLGAIWSSASPDFGVQGVLDRFG 184 Query: 185 QIAPKLFIVCDGYWYNGKRQDVDSKVRAVAKSLGA--PTVIVPYAGDSAALAPTVEGGVT 242 QIAPK+ + +GY+Y+GK D K+ A+ + + V+VPY ++A L+ V+ V Sbjct: 185 QIAPKVLVAAEGYFYSGKAHDCLEKLAAIVPGIPSLERVVVVPYTREAADLSG-VDKAVH 243 Query: 243 LADFIAGFQAGPLVFERLPFGHPLYILFSSGTTGVPKCIVHSAGGTLLQHLKEHRFHCGL 302 L DF+A F A + F RLPF HPLYI++SSGTTG PKCIVHSAGG+L+Q LKEHR HC + Sbjct: 244 LGDFLAPFPAKAVEFLRLPFDHPLYIMYSSGTTGAPKCIVHSAGGSLIQQLKEHRLHCDV 303 Query: 303 RDGERLFYFTTCGWMMWNWLASGLAVGATLCLYDGSPFCPDGNVLFDYAAAERFAVFGTS 362 R +R+FYFTTCGWMMWNWL +GL ATL LYDG+P GN+LFD+A AE +FGTS Sbjct: 304 RKDDRVFYFTTCGWMMWNWLVAGLGAEATLLLYDGNPSHLGGNILFDFADAEGMTLFGTS 363 Query: 363 AKYIDAVRKGGFTPARTHDLSSLRLMTSTGSPLSPEGFSFVYEGIKPDVQLASISGGTDI 422 AK+IDA+ K G P +TH L+++R + STGS L+PEGF +VY +K DVQLASISGGTDI Sbjct: 364 AKWIDAIAKSGLEPIKTHSLATVRTICSTGSVLAPEGFDYVYAKVKADVQLASISGGTDI 423 Query: 423 VSCFVLGNPLKPVWRGEIQGPGLGLAVDVWNDEGKPVRGEKGELVCTRAFPSMPVMFWND 482 +SCF+LGNPL PV+RGEIQ GLG+ V+V+++ G+ + G KGELVCTRAFPSMPV FWND Sbjct: 424 ISCFMLGNPLVPVYRGEIQCRGLGMKVEVFDENGQSLAGSKGELVCTRAFPSMPVGFWND 483 Query: 483 PDGAKYRAAYFDRFDNVWCHGDFAEWTPH-GGIVIHGRSDATLNPGGVRIGTAEIYNQVE 541 DGAKYRAAYF++F +W HGD+ E P GGI++ GRSDATLNPGGVRIGTAEIY QVE Sbjct: 484 DDGAKYRAAYFEKFPGIWTHGDWVELNPETGGIIVFGRSDATLNPGGVRIGTAEIYRQVE 543 Query: 542 QMDEVAEALCIGQDWEDDVRVVLFVRLARGVELTEALTREIKNRIRSGASPRHVPAKIIA 601 Q+D+V E+L IGQDW+ DVRVVLFVRL GV L+ L IK RIR +PRHVPAK++ Sbjct: 544 QIDDVLESLVIGQDWQADVRVVLFVRLRDGVTLSPELETRIKKRIRDNTTPRHVPAKVVQ 603 Query: 602 VADIPRTKSGKIVELAVRDVVHGRPVKNKEALANPEALDLFAGLEELK 649 VADIPRTKSGKIVELAVRDVVHGR VKNKEALANPEALDLFAG EL+ Sbjct: 604 VADIPRTKSGKIVELAVRDVVHGRAVKNKEALANPEALDLFAGRAELE 651 Lambda K H 0.322 0.139 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1441 Number of extensions: 65 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 650 Length of database: 652 Length adjustment: 38 Effective length of query: 612 Effective length of database: 614 Effective search space: 375768 Effective search space used: 375768 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.4 bits)
Align candidate WP_011383023.1 AMB_RS03000 (acetoacetate--CoA ligase)
to HMM TIGR01217 (acetoacetate-CoA ligase (EC 6.2.1.16))
../bin/blast/fastacmd -i /tmp/list.24784.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24784.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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