Align fructose-bisphosphate aldolase (EC 4.1.2.13) (characterized)
to candidate WP_011383790.1 AMB_RS06985 fructose-bisphosphate aldolase class II
Query= BRENDA::Q602L6 (354 letters) >NCBI__GCF_000009985.1:WP_011383790.1 Length = 354 Score = 523 bits (1347), Expect = e-153 Identities = 255/353 (72%), Positives = 300/353 (84%) Query: 1 MALISLRQLLDHAAEHGYGLPAFNVNNMEQIKAIMEAASAVDAPVILQGSAGARTYAGEP 60 M+L+S+RQLLDHAAE+ YG+PAFNVNNMEQ+KAIMEAASA DAPVILQ SAGAR YAGEP Sbjct: 1 MSLVSMRQLLDHAAENSYGIPAFNVNNMEQVKAIMEAASACDAPVILQASAGARKYAGEP 60 Query: 61 FLRHLVRAAIEMYPHIPVCMHQDHGASPAVCIRSIQSGFSSVMMDGSLLEDMKTPASYAY 120 FLRHL+ AAIE YP IPVCMHQDHG SPA+ +R+IQSGFSSVMMDGSL ED KTP+ + Y Sbjct: 61 FLRHLILAAIEAYPQIPVCMHQDHGTSPAINVRAIQSGFSSVMMDGSLREDGKTPSDWDY 120 Query: 121 NVETTRKVVEMAHACGVSVEGELGCLGSLETGRAGKEDGHGAEGELDHSLLLTDPDEAAD 180 NV T++VV++AHACGVSVEGELGCLGSLETG AGKEDG GAEG+LDHS LLTDPDEAA+ Sbjct: 121 NVAVTKQVVDIAHACGVSVEGELGCLGSLETGTAGKEDGVGAEGKLDHSQLLTDPDEAAE 180 Query: 181 FVRQTQVDALAIAIGTSHGAYKFTRKPTGQVLRIDRVKAIHQRIPTIHLVMHGSSSVPEE 240 FV+ TQVDALAIAIGTSHGAYKFTR PTG+VL I R+K IH RIP HLVMHGSSSVP++ Sbjct: 181 FVKLTQVDALAIAIGTSHGAYKFTRPPTGEVLAIKRIKEIHARIPNTHLVMHGSSSVPQD 240 Query: 241 WAQMINDYGGDIGQTYGVPVEEIVEGIRHGVRKVNIDTDLRIASYGAMRRFMVEDRKNFD 300 +++NDYGG +G+TYGVPV EIVEGI+HGVRK+NIDTDLR+A G +R++ ++ K FD Sbjct: 241 LLKIVNDYGGALGETYGVPVGEIVEGIKHGVRKINIDTDLRLAVTGCIRKYFHDNPKKFD 300 Query: 301 PRKLYKAAQTAMTAICRARYEAFGAAGQAAKIKPLRLEDMSLAYAQGKLDPIV 353 PR K + AM +C++RY+AFG +GQA+KIK + LEDMS YA+G L P V Sbjct: 301 PRDYLKPSIAAMVEVCKSRYDAFGTSGQASKIKVVGLEDMSALYAKGALAPKV 353 Lambda K H 0.320 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 507 Number of extensions: 21 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 354 Length of database: 354 Length adjustment: 29 Effective length of query: 325 Effective length of database: 325 Effective search space: 105625 Effective search space used: 105625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate WP_011383790.1 AMB_RS06985 (fructose-bisphosphate aldolase class II)
to HMM TIGR01521 (fba: fructose-bisphosphate aldolase, class II, Calvin cycle subtype (EC 4.1.2.13))
../bin/blast/fastacmd -i /tmp/list.19361.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19361.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.