GapMind for catabolism of small carbon sources

 

Alignments for a candidate for gloA in Magnetospirillum magneticum AMB-1

Align lactoylglutathione lyase (EC 4.4.1.5) (characterized)
to candidate WP_011384864.1 AMB_RS12480 lactoylglutathione lyase

Query= BRENDA::P0A0T3
         (138 letters)



>NCBI__GCF_000009985.1:WP_011384864.1
          Length = 130

 Score =  189 bits (479), Expect = 2e-53
 Identities = 84/126 (66%), Positives = 103/126 (81%)

Query: 2   RLLHTMLRVGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFVGYGDETDSTVLELTHNW 61
           R LHTM+RVGNL++S+ FY ++LGMKLLRR DYPEGRFTLAFVGYG+E  +TV+ELTHNW
Sbjct: 5   RFLHTMIRVGNLDRSIHFYTSLLGMKLLRRTDYPEGRFTLAFVGYGEEASNTVVELTHNW 64

Query: 62  DTERYDLGNAYGHIAVEVDDAYEACERVKRQGGNVVREAGPMKHGTTVIAFVEDPDGYKI 121
           DTE Y+LG  +GH+A+ V D Y+AC  ++  G  + R  GPMKHG+T+IAFVEDPDGYKI
Sbjct: 65  DTESYELGGGFGHLALGVPDIYKACAELEAAGAKITRAPGPMKHGSTIIAFVEDPDGYKI 124

Query: 122 EFIQKK 127
           E IQ K
Sbjct: 125 ELIQAK 130


Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 106
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 130
Length adjustment: 15
Effective length of query: 123
Effective length of database: 115
Effective search space:    14145
Effective search space used:    14145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)

Align candidate WP_011384864.1 AMB_RS12480 (lactoylglutathione lyase)
to HMM TIGR00068 (gloA: lactoylglutathione lyase (EC 4.4.1.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.5898.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5898.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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