Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate WP_011384718.1 AMB_RS11730 dihydrolipoyl dehydrogenase
Query= BRENDA::P50970 (466 letters) >NCBI__GCF_000009985.1:WP_011384718.1 Length = 462 Score = 543 bits (1398), Expect = e-159 Identities = 277/464 (59%), Positives = 346/464 (74%), Gaps = 9/464 (1%) Query: 5 FDLIVLGGGPGGYVAAIRAAQLNLKVALVERVHLGGICLNWGCIPTKSLLRSAEVYHEMQ 64 FD+IV+GGGPGGYVAAIRAAQL + ALVER HLGGICLNWGCIPTK+LLRSAE+Y MQ Sbjct: 6 FDIIVIGGGPGGYVAAIRAAQLGMNTALVEREHLGGICLNWGCIPTKALLRSAEIYRNMQ 65 Query: 65 NAEAYGLTSFKPDFDLDKIIARSREVATRLASGVKTLLRKNKVEVISGVGQLTGNQQMLV 124 +AE+YGL++ FDL KI+ARSR V+ +L GVK LL+KNKV VI G +L G ++ + Sbjct: 66 HAESYGLSAPGATFDLAKIVARSRGVSAQLQGGVKHLLKKNKVTVIEGTAKLAGGSKVAI 125 Query: 125 ETTEGEEKILEAKDIIIATGARARQLPNVHSDGKHIWTYHHALKPPAMPKKLLVIGSGAI 184 E + + A II+ATGARAR LP DGK IWTY AL P MPK+LLVIGSGAI Sbjct: 126 EG----KPTISAPHIILATGARARILPGFEPDGKFIWTYKEALVPDTMPKRLLVIGSGAI 181 Query: 185 GIEFASFYADFGAEVSIVEHAPQILPMEDAEVSAYVAKAFKKRGIRILTQSALQNLTPD- 243 GIEFASF+ GA+V++ E ++LP+EDAE+SA K+F+K+G++IL + ++ L + Sbjct: 182 GIEFASFFNALGAQVTVAEAMDRVLPVEDAEISAMAQKSFEKQGMKILAGANIKGLKKNA 241 Query: 244 -DEGVTAEIAGADGKVTKERFSHAIVAIGVVANVENIGLDKLGIKLDRGFIAVDGFGRTN 302 D VT E G +VT +R I AIG+V NVEN+GL+ K++R + D + RT Sbjct: 242 VDVTVTIEAGGKTHEVTVDRI---ITAIGIVGNVENVGLEATKAKVERTHVITDEYCRTG 298 Query: 303 VDHVWAIGDVAGAPCLAHKASHQGVIAAEAIAGCDHVHPLNTQNIPGCTYARPQVASVGL 362 ++AIGD+AGAP LAHKASH+ +I E I G VHPL+ + IPGCTY PQVASVGL Sbjct: 299 EPGLYAIGDIAGAPWLAHKASHEAIICVEKIKGLPDVHPLDMRKIPGCTYCHPQVASVGL 358 Query: 363 TEEKARQQGYNVKIGNFPFIANGKAIAQGATDGFVKTVFDADSGALLGAHMVGAEVTEMI 422 +E KA+++GY VK+G FPF+ANGKAIA G T+G +KTVFDA +G LLGAHM+GAEVTE+I Sbjct: 359 SEAKAKEKGYAVKVGRFPFMANGKAIALGETEGMIKTVFDAKTGELLGAHMIGAEVTELI 418 Query: 423 QGYTVARTLETTEAEIMETIFPHPTLSEAMHESVLAAYGRALHF 466 QGY VA+TLETTEAE+M T+F HPTLSE MHESVL AYGRA+HF Sbjct: 419 QGYVVAKTLETTEAELMHTVFAHPTLSEMMHESVLDAYGRAVHF 462 Lambda K H 0.319 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 696 Number of extensions: 32 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 466 Length of database: 462 Length adjustment: 33 Effective length of query: 433 Effective length of database: 429 Effective search space: 185757 Effective search space used: 185757 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate WP_011384718.1 AMB_RS11730 (dihydrolipoyl dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.29492.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29492.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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