Align acetate kinase (EC 2.7.2.1) (characterized)
to candidate WP_011384935.1 AMB_RS12860 acetate/propionate family kinase
Query= BRENDA::Q9WYB1 (403 letters) >NCBI__GCF_000009985.1:WP_011384935.1 Length = 397 Score = 290 bits (741), Expect = 7e-83 Identities = 161/409 (39%), Positives = 265/409 (64%), Gaps = 28/409 (6%) Query: 3 VLVINSGSSSIKYQLIEMEGEK---VLCKGIAERIGIEGSRLVHRVGDEKH---VIEREL 56 +LVIN+GSSSIK+ L G++ + CKG E I + H + H + E+ Sbjct: 5 ILVINAGSSSIKFSLYISNGDEKPLLSCKGQVEGINVAP----HFIAKSPHGGVLNEQRW 60 Query: 57 PDH----EEALKLILNTLVDEKLGVIKDLKEIDAVGHRVVHGGERFKESVLVDEEVLKAI 112 PD EAL + ++ +LG E+ A GHRVVHGG ++ + +LV++E+++ + Sbjct: 61 PDQPNMSHEALFKYMIEWIEAQLGDA----ELKAAGHRVVHGGSQYSQPLLVNDELMEEL 116 Query: 113 EEVSPLAPLHNPANLMGIKAAMKLLPGVPNVAVFDTAFHQTIPQKAYLYAIPYEYYEKYK 172 E++ PLAPLH P NL I+A K+ PG+ VA FDTAFH++ P A +A+P + + Sbjct: 117 EKLIPLAPLHQPHNLAPIRALTKVHPGLTQVACFDTAFHRSNPWTAQSFALPRKITGE-G 175 Query: 173 IRRYGFHGTSHRYVSKRAAEILGKKLEELKIITCHIGNGASVAAVKYGKCVDTSMGFTPL 232 ++RYGFHG S+ +++++ + L K++ CH+G+GAS+ A+ GK V ++MGFT + Sbjct: 176 VKRYGFHGLSYEFIARQMRQ-LSPAAARGKVVVCHLGSGASMCAIDGGKSVASTMGFTAV 234 Query: 233 EGLVMGTRSGDLDPAIPFFIMEKEGISPQEMYDILNKKSGVYGLSKGFSSDMRDIEEAAL 292 +GL MGTR+G +D + ++++++G++P+E+ D+L K+SG+ G+S G S+DMR + E++ Sbjct: 235 DGLPMGTRTGTMDAGVILYLLQQKGMTPKEIEDLLYKQSGLLGVS-GVSNDMRILLESS- 292 Query: 293 KGDEWCKLVLEIYDYRIAKYIGAYAAAMNGVDAIVFTAGVGENSPITREDVCSYLEFLGV 352 + +E++ YRI++ +G+ AAAM G+DA+VFTAG+GE SP RE VC++ E+LGV Sbjct: 293 --EPHAAEAVELFVYRISRELGSLAAAMGGLDALVFTAGIGERSPQIRERVCAHAEWLGV 350 Query: 353 KLDKQKNEETIRGKEGIISTPDSRVKVLVVPTNEELMIARDTKEIVEKI 401 ++D++ N+ +IS DS V V V+PT+EE+MIA+ T+E++ + Sbjct: 351 EMDQEANQR----DSLLISAADSPVSVWVIPTDEEMMIAKHTRELLRSL 395 Lambda K H 0.318 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 423 Number of extensions: 27 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 403 Length of database: 397 Length adjustment: 31 Effective length of query: 372 Effective length of database: 366 Effective search space: 136152 Effective search space used: 136152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate WP_011384935.1 AMB_RS12860 (acetate/propionate family kinase)
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))
../bin/blast/fastacmd -i /tmp/list.25446.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25446.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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