N-acetyl-D-glucosamine catabolism

GapMind for catabolism of small carbon sources

N-acetyl-D-glucosamine catabolism

Analysis of pathway NAG in 276 genomes

Genome	Best path
Acidovorax caeni R-24608	nagEcba, nagA, nagB
Actinokineospora bangkokensis 44EHW	nagEcba, nagA, nagB
Actinomyces timonensis 7400942	crr, ptsB, ptsC, nagA, nagB
Algiphilus aromaticivorans DG1253	nagEcba, nagA, nagB
Algoriphagus aquaeductus T4	nagEcba, nagA, nagB
Algoriphagus machipongonensis PR1	nagEcba, nagA, nagB
Alicyclobacillus ferrooxydans TC-34	nagEcba, nagA, nagB
Alishewanella agri BL06	nagP, nagK, nagA, nagB
Alistipes indistinctus YIT 12060	nagP, nagK, nagA, nagB
Alistipes shahii WAL 8301	nagP, nagK, nagA, nagB
Alkalitalea saponilacus SC/BZ-SP2	nagP, nagK, nagA, nagB
Amantichitinum ursilacus IGB-41	nagEcba, nagA, nagB
Amphibacillus jilinensis Y1	nagEIIA, nagPcb, nagA, nagB
Amphritea japonica JAMM 1866	nagEcba, nagA, nagB
Amycolatopsis halophila YIM 93223	nagEcba, nagA, nagB
Amycolatopsis xylanica CPCC 202699	crr, ptsB, ptsC, nagA, nagB
Aquimarina agarilytica ZC1	nagP, nagK, nagA, nagB
Aquimarina longa SW024	nagEcba, nagA, nagB
Aquimarina macrocephali JAMB N27	nagEcba, nagA, nagB
Archaeoglobus sulfaticallidus PM70-1	nagEcba, nagA, nagB
Arcticibacter svalbardensis MN12-7	nagP, nagK, nagA, nagB
Ardenticatena maritima 110S	nagEcba, nagA, nagB
Arenimonas metalli CF5-1	nagEcba, nagA, nagB
Arenitalea lutea P7-3-5	nagP, nagK, nagA, nagB
Azospirillum humicireducens SgZ-5	nagF, nagEcb, nagA, nagB
Azospirillum thiophilum BV-S	nagF, nagEcb, nagA, nagB
Bacillus altitudinis 41KF2b	nagEIIA, nagPcb, nagA, nagB
Bacillus coahuilensis m4-4	nagEIIA, nagPcb, nagA, nagB
Bacillus cytotoxicus NVH 391-98	nagEIIA, nagPcb, nagA, nagB
Bacillus horneckiae 1P01SC	nagEcba, nagA, nagB
Bacillus okhensis Kh10-101	nagEIIA, nagPcb, nagA, nagB
Bacillus safensis FO-36b	nagEIIA, nagPcb, nagA, nagB
Bacillus velezensis CBMB205	nagEIIA, nagPcb, nagA, nagB
Bacteroides clarus YIT 12056	nagP, nagK, nagA, nagB
Bacteroides faecis MAJ27	nagP, nagK, nagA, nagB
Bacteroides fluxus YIT 12057	nagP, nagK, nagA, nagB
Bacteroides oleiciplenus YIT 12058	nagP, nagK, nagA, nagB
Barnesiella intestinihominis YIT 11860	nagP, nagK, nagA, nagB
Belnapia rosea CPCC 100156	nagEcba, nagA, nagB
Bizionia argentinensis JUB59	nagEcba, nagA, nagB
Bradyrhizobium diazoefficiens USDA110	nagEcba, nagA, nagB
Brevibacterium jeotgali SJ5-8	nagEcba, nagA, nagB
Brucella inopinata BO1	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Brucella microti CCM 4915	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Bryobacter aggregatus MPL3	nagEcba, nagA, nagB
Caldicellulosiruptor hydrothermalis 108	nagEcba, nagA, nagB
Caldicellulosiruptor kronotskyensis 2002	nagEcba, nagA, nagB
Carboxydothermus pertinax Ug1	nagEcba, nagA, nagB
Catellicoccus marimammalium M35/04/3	nagEIIA, nagPcb, nagA, nagB
Chromobacterium vaccinii MWU205	nagF, nagEcb, nagA, nagB
Chryseobacterium angstadtii KM	nagP, nagK, nagA, nagB
Chryseobacterium arthrosphaerae CC-VM-7	nagP, nagK, nagA, nagB
Chryseobacterium viscerum 687B-08	nagP, nagK, nagA, nagB
Cloacibacillus porcorum CL-84	nagEcba, nagA, nagB
Cobetia crustatorum JO1	nagEcba, nagA, nagB
Collimonas arenae Ter10	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Collimonas pratensis Ter91	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Collinsella tanakaei YIT 12063	nagEcba, nagA, nagB
Coprobacter fastidiosus NSB1	nagP, nagK, nagA, nagB
Corynebacterium deserti GIMN1.010	nagEcba, nagA, nagB
Corynebacterium frankenforstense ST18	nagEcba, nagA, nagB
Corynebacterium lactis RW2-5	nagEcba, nagA, nagB
Croceitalea dokdonensis DOKDO 023	nagP, nagK, nagA, nagB
Cronobacter condimenti 1330	nagEcba, nagA, nagB
Cronobacter muytjensii ATCC 51329	nagEcba, nagA, nagB
Cronobacter universalis NCTC 9529	nagEcba, nagA, nagB
Desulfatitalea tepidiphila S28bF	nagEcba, nagA, nagB
Desulfotomaculum hydrothermale Lam5	nagEcba, nagA, nagB
Dethiosulfovibrio salsuginis USBA 82	nagEcba, nagA, nagB
Devosia chinhatensis IPL18	nagEcba, nagA, nagB
Devriesea agamarum IMP2	crr, ptsB, ptsC, nagA, nagB
Dialister succinatiphilus YIT 11850	nagEcba, nagA, nagB
Dietzia timorensis ID05-A0528	nagEcba, nagA, nagB
Dokdonella koreensis DS-123	nagEcba, nagA, nagB
Domibacillus robiginosus WS 4628	nagEIIA, nagPcb, nagA, nagB
Duganella sacchari Sac-22	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Dyadobacter tibetensis Y620-1	nagP, nagK, nagA, nagB
Dyella jiangningensis SBZ3-12	nagP, nagK, nagA, nagB
Endozoicomonas montiporae CL-33	nagEcba, nagA, nagB
Enterococcus termitis LMG 8895	nagEcba, nagA, nagB
Enterorhabdus caecimuris B7	nagEcba, nagA, nagB
Epibacterium ulvae U95	nagEcba, nagA, nagB
Erythrobacter gangjinensis K7-2	nagEcba, nagA, nagB
Erythrobacter marinus HWDM-33	nagEcba, nagA, nagB
Ethanoligenens harbinense YUAN-3	nagEcba, nagA, nagB
Fervidicella metallireducens AeB	nagEcba, nagA, nagB
Fibrella aestuarina BUZ 2	nagEcba, nagA, nagB
Flammeovirga pacifica WPAGA1	nagP, nagK, nagA, nagB
Flaviramulus ichthyoenteri Th78	nagP, nagK, nagA, nagB
Flavobacterium beibuense F44-8	nagEcba, nagA, nagB
Flavobacterium glycines Gm-149	nagP, nagK, nagA, nagB
Flavobacterium sp. LM5	nagEcba, nagA, nagB
Flavobacterium ummariense DS-12	nagEcba, nagA, nagB
Frischella perrara PEB0191	nagEcba, nagA, nagB
Galbibacter marinus ck-I2-15	nagP, nagK, nagA, nagB
Gallaecimonas xiamenensis 3-C-1	nagP, nagK, nagA, nagB
Geobacter daltonii FRC-32	nagEcba, nagA, nagB
Gillisia marina CBA3202	nagP, nagK, nagA, nagB
Gracilibacillus halophilus YIM-C55.5	nagEIIA, nagPcb, nagA, nagB
Granulicella mallensis MP5ACTX8	nagEcba, nagA, nagB
Granulicella tundricola MP5ACTX9	nagEcba, nagA, nagB
Hafnia paralvei ATCC 29927	nagEcba, nagA, nagB
Haladaptatus cibarius D43	nagEcba, nagA, nagB
Halioglobus japonicus S1-36	nagP, nagK, nagA, nagB
Halobacillus alkaliphilus FP5	nagEIIA, nagPcb, nagA, nagB
Halococcus hamelinensis 100A6	nagEcba, nagA, nagB
Halomonas salina B6	nagEcba, nagA, nagB
Halomonas smyrnensis AAD6	nagEcba, nagA, nagB
Halomonas stevensii S18214	nagEcba, nagA, nagB
Halomonas titanicae BH1	nagEcba, nagA, nagB
Halomonas xinjiangensis TRM 0175	nagEcba, nagA, nagB
Halopiger salifodinae KCY07-B2	nagEcba, nagA, nagB
Halostagnicola larsenii XH-48	nagEcba, nagA, nagB
Haloterrigena daqingensis JX313	nagEcba, nagA, nagB
Herbaspirillum aquaticum IEH 4430	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Hippea alviniae EP5-r	nagEcba, nagA, nagB
Hippea jasoniae Mar08-272r	nagEcba, nagA, nagB
Hoeflea phototrophica DFL-43	nagEcba, nagA, nagB
Hyphomicrobium nitrativorans NL23	nagEcba, nagA, nagB
Imtechella halotolerans K1	nagEcba, nagA, nagB
Indibacter alkaliphilus LW1	nagEcba, nagA, nagB
Jannaschia aquimarina GSW-M26	nagEcba, nagA, nagB
Jeotgalibacillus soli P9	nagEcba, nagA, nagB
Kangiella geojedonensis YCS-5	nagEcba, nagA, nagB
Knoellia flava TL1	nagEcba, nagA, nagB
Kocuria flava HO-9041	nagEcba, nagA, nagB
Kocuria turfanensis HO-9042	nagEcba, nagA, nagB
Laceyella sediminis RHA1	nagEIIA, nagPcb, nagA, nagB
Lacinutrix algicola AKS293	nagP, nagK, nagA, nagB
Lacinutrix himadriensis E4-9a	nagEcba, nagA, nagB
Lacinutrix mariniflava AKS432	nagEcba, nagA, nagB
Lactobacillus curieae CCTCC M 2011381	nagEcba, nagA, nagB
Lactobacillus delbrueckii ZN7a-9	nagEcba, nagA, nagB
Lactobacillus hokkaidonensis LOOC260	nagEcba, nagA, nagB
Lactobacillus oryzae SG293	nagEcba, nagA, nagB
Lactobacillus pobuzihii E100301	nagEcba, nagA, nagB
Lactobacillus shenzhenensis LY-73	nagEcba, nagA, nagB
Lactobacillus silagei IWT126	nagEcba, nagA, nagB
Leeuwenhoekiella blandensis MED217	nagEcba, nagA, nagB
Lentibacillus jeotgali Grbi	nagEIIA, nagPcb, nagA, nagB
Limnohabitans curvus MWH-C5	nagEcba, nagA, nagB
Limnohabitans parvus II-B4	nagEcba, nagA, nagB
Listeria fleischmannii LU2006-1	nagEIIA, nagPcb, nagA, nagB
Luteimonas huabeiensis HB2	nagP, nagK, nagA, nagB
Luteipulveratus mongoliensis MN07-A0370	nagEcba, nagA, nagB
Lutibaculum baratangense AMV1	nagEcba, nagA, nagB
Lysobacter daejeonensis GH1-9	nagEcba, nagA, nagB
Magnetovibrio blakemorei MV-1	nagEcba, nagA, nagB
Marinicella litoralis KMM 3900	nagEcba, nagA, nagB
Mariniradius saccharolyticus AK6	nagEcba, nagA, nagB
Marinobacter algicola DG893	nagEcba, nagA, nagB
Marinobacter guineae M3B	nagEcba, nagA, nagB
Marinobacter psychrophilus 20041	nagEcba, nagA, nagB
Marinomonas arctica 328	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Marivita geojedonensis DPG-138	nagEcba, nagA, nagB
Martelella endophytica YC6887	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Megamonas funiformis YIT 11815	nagEcba, nagA, nagB
Mesorhizobium ciceri WSM1271	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Methanobacterium arcticum M2	nagEcba, nagA, nagB
Methanobacterium veterum MK4	nagEcba, nagA, nagB
Methanocella arvoryzae MRE50	nagEcba, nagA, nagB
Methanococcus aeolicus Nankai-3	nagEcba, nagA, nagB
Methanoculleus horonobensis T10	nagEcba, nagA, nagB
Methanolinea tarda NOBI-1	nagEcba, nagA, nagB
Methanosarcina soligelidi SMA-21	nagEcba, nagA, nagB
Methanospirillum lacunae Ki8-1	nagEcba, nagA, nagB
Methanospirillum stamsii Pt1	nagEcba, nagA, nagB
Methylibium petroleiphilum PM1	nagEcba, nagA, nagB
Methylobacterium gossipiicola Gh-105	nagEcba, nagA, nagB
Methylocapsa aurea KYG	nagEcba, nagA, nagB
Methylotenera versatilis 301	nagEcba, nagA, nagB
Microbacterium profundi Shh49	nagEcba, nagA, nagB
Microvirga lotononidis WSM3557	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Moritella dasanensis ArB 0140	nagEcba, nagA, nagB
Mucilaginibacter gossypii Gh-67	nagP, nagK, nagA, nagB
Mucilaginibacter gossypiicola Gh-48	nagP, nagK, nagA, nagB
Mucilaginibacter mallensis MP1X4	nagP, nagK, nagA, nagB
Nafulsella turpanensis ZLM-10	nagEcba, nagA, nagB
Natronomonas moolapensis 8.8.11	nagEcba, nagA, nagB
Nautilia profundicola AmH	nagEcba, nagA, nagB
Neiella marina J221	nagEcba, nagA, nagB
Neptunomonas antarctica S3-22	nagEcba, nagA, nagB
Nocardioides daejeonensis MJ31	nagEcba, nagA, nagB
Nocardioides dokdonensis FR1436	nagEcba, nagA, nagB
Nocardiopsis baichengensis YIM 90130	crr, ptsB, ptsC, nagA, nagB
Nocardiopsis gilva YIM 90087	crr, ptsB, ptsC, nagA, nagB
Novosphingobium barchaimii LL02	nagEcba, nagA, nagB
Novosphingobium fuchskuhlense FNE08-7	nagEcba, nagA, nagB
Novosphingobium lindaniclasticum LE124	nagEcba, nagA, nagB
Oceanisphaera arctica V1-41	nagP, nagK, nagA, nagB
Ochrobactrum rhizosphaerae PR17	nagEcba, nagA, nagB
Ochrobactrum thiophenivorans DSM 7216	nagP, nagK, nagA, nagB
Oscillibacter ruminantium GH1	nagEcba, nagA, nagB
Paenisporosarcina indica PN2	nagEcba, nagA, nagB
Palaeococcus pacificus DY20341	nagEcba, nagA, nagB
Paludibacter propionicigenes WB4	nagP, nagK, nagA, nagB
Pandoraea thiooxydans ATSB16	nagEcba, nagA, nagB
Pantoea rwandensis LMG 26275	nagEcba, nagA, nagB
Pedobacter arcticus A12	nagP, nagK, nagA, nagB
Photobacterium gaetbulicola Gung47	nagEcba, nagA, nagB
Photobacterium jeanii R-40508	nagEcba, nagA, nagB
Phyllobacterium brassicacearum STM 196	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Phyllobacterium endophyticum PEPV15	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Phyllobacterium leguminum ORS 1419	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Planktomarina temperata RCA23	nagEcba, nagA, nagB
Planococcus halocryophilus Or1	nagEcba, nagA, nagB
Pleomorphomonas diazotrophica R5-392	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Polaribacter dokdonensis DSW-5	nagP, nagK, nagA, nagB
Pontibacillus litoralis JSM 072002	nagEcba, nagA, nagB
Pontibacter lucknowensis DM9	nagP, nagK, nagA, nagB
Pontibacter ramchanderi LP43	nagP, nagK, nagA, nagB
Pontimonas salivibrio CL-TW6	nagEcba, nagA, nagB
Porphyrobacter dokdonensis DSW-74	nagEcba, nagA, nagB
Pseudoalteromonas arctica A 37-1-2	nagEcba, nagA, nagB
Pseudomonas baetica a390	nagF, nagEcb, nagA, nagB
Pseudomonas litoralis 2SM5	nagEcba, nagA, nagB
Pseudomonas taeanensis MS-3	nagEcba, nagA, nagB
Pseudovibrio axinellae Ad2	nagEcba, nagA, nagB
Psychrobacter arcticus 273-4	nagEcba, nagA, nagB
Psychrobacter cryohalolentis K5	nagEcba, nagA, nagB
Psychromonas ingrahamii 37	nagEcba, nagA, nagB
Psychromonas ossibalaenae JAMM 0738	nagEcba, nagA, nagB
Rhizobium freirei PRF 81	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Rhizobium grahamii CCGE 502	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Rhizobium subbaraonis JC85	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Rhodanobacter denitrificans 2APBS1	nagP, nagK, nagA, nagB
Rhodobacter johrii JA192	nagEcba, nagA, nagB
Rhodobacter maris JA276	nagEcba, nagA, nagB
Rhodobacter ovatus JA234	nagEcba, nagA, nagB
Rhodobacter viridis JA737	nagEcba, nagA, nagB
Rhodococcus qingshengii djl-6-2	crr, ptsB, ptsC, nagA, nagB
Rhodopseudomonas pseudopalustris DSM 123	nagEcba, nagA, nagB
Roseateles aquatilis CCUG 48205	nagEcba, nagA, nagB
Roseivirga spongicola UST030701-084	nagP, nagK, nagA, nagB
Rubrivirga marina SAORIC-28	nagEcba, nagA, nagB
Ruegeria conchae TW15	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Saccharomonospora marina XMU15	crr, ptsB, ptsC, nagA, nagB
Salinicoccus carnicancri Crm	nagEIIA, nagPcb, nagA, nagB
Serinicoccus profundi MCCC 1A05965	nagEcba, nagA, nagB
Shewanella halifaxensis HAW-EB4	nagP, nagK, nagA, nagB
Skermanella stibiiresistens SB22	nagEcba, nagA, nagB
Snodgrassella alvi wkB2	nagEcba, nagA, nagB
Sphaerochaeta globosa Buddy	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Sphaerochaeta pleomorpha Grapes	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Sphingobium baderi LL03	nagEcba, nagA, nagB
Sphingobium czechense LL01	nagEcba, nagA, nagB
Sphingobium quisquiliarum P25	nagEcba, nagA, nagB
Sphingomonas histidinilytica UM2	nagEcba, nagA, nagB
Sphingomonas indica Dd16	nagEcba, nagA, nagB
Sphingomonas laterariae LNB2	nagF, nagEcb, nagA, nagB
Sphingopyxis indica DS15	nagF, nagEcb, nagA, nagB
Sphingopyxis terrae UI2	nagEcba, nagA, nagB
Sporolactobacillus vineae SL153	nagEcba, nagA, nagB
Streptacidiphilus oryzae TH49	crr, ptsB, ptsC, nagA, nagB
Streptococcus anginosus CCUG 39159	nagEcba, nagA, nagB
Streptococcus massiliensis 4401825	nagEcba, nagA, nagB
Streptococcus oralis 7747	nagEcba, nagA, nagB
Streptococcus oralis AZ_3a	nagEcba, nagA, nagB
Streptomyces kebangsaanensis SUK12	crr, ptsB, ptsC, nagA, nagB
Succinatimonas hippei YIT 12066	nagEcba, nagA, nagB
Sulfurimonas gotlandica GD1	nagP, nagK, nagA, nagB
Tatumella morbirosei LMG 23360	nagEcba, nagA, nagB
Thauera humireducens SgZ-1	nagEcba, nagA, nagB
Thermoactinomyces daqus H-18	nagEIIA, nagPcb, nagA, nagB
Thermobifida halotolerans YIM 90462	nagEcba, nagA, nagB
Thermodesulfovibrio aggregans TGE-P1	nagEcba, nagA, nagB
Thermophagus xiamenensis HS1	nagP, nagK, nagA, nagB
Thermovenabulum gondwanense R270	nagEcba, nagA, nagB
Thioclava dalianensis DLFJ1-1	SMc02869, SMc02872, SMc02871, SMc02873, nagK, nagA, nagB
Thiohalospira halophila HL 3	nagEcba, nagA, nagB
Tistlia consotensis USBA 355	nagEcba, nagA, nagB
Vagococcus penaei CD276	nagEcba, nagA, nagB
Verminephrobacter eiseniae EF01-2	nagEcba, nagA, nagB
Weissella oryzae SG25	nagEcba, nagA, nagB
Williamsia sterculiae CPCC 203464	nagEcba, nagA, nagB
Yersinia intermedia Y228	nagEcba, nagA, nagB

Confidence: high confidence medium confidence low confidence
transporter – transporters and PTS systems are shaded because predicting their specificity is particularly challenging.

This GapMind analysis is from Sep 24 2021. The underlying query database was built on Sep 17 2021.

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Candidates (tab-delimited)
Steps (tab-delimited)
Rules (tab-delimited)
Protein sequences (fasta format)
Organisms (tab-delimited)
SQLite3 databases

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About GapMind

Each pathway is defined by a set of rules based on individual steps or genes. Candidates for each step are identified by using ublast (a fast alternative to protein BLAST) against a database of manually-curated proteins (most of which are experimentally characterized) or by using HMMer with enzyme models (usually from TIGRFam). Ublast hits may be split across two different proteins.

A candidate for a step is "high confidence" if either:

ublast finds a hit to a characterized protein at above 40% identity and 80% coverage, and bits >= other bits+10.
- (Hits to curated proteins without experimental data as to their function are never considered high confidence.)
HMMer finds a hit with 80% coverage of the model, and either other identity < 40 or other coverage < 0.75.

where "other" refers to the best ublast hit to a sequence that is not annotated as performing this step (and is not "ignored").

Otherwise, a candidate is "medium confidence" if either:

ublast finds a hit at above 40% identity and 70% coverage (ignoring otherBits).
ublast finds a hit at above 30% identity and 80% coverage, and bits >= other bits.
HMMer finds a hit (regardless of coverage or other bits).

Other blast hits with at least 50% coverage are "low confidence."

Steps with no high- or medium-confidence candidates may be considered "gaps." For the typical bacterium that can make all 20 amino acids, there are 1-2 gaps in amino acid biosynthesis pathways. For diverse bacteria and archaea that can utilize a carbon source, there is a complete high-confidence catabolic pathway (including a transporter) just 38% of the time, and there is a complete medium-confidence pathway 63% of the time. Gaps may be due to:

our ignorance of proteins' functions,
omissions in the gene models,
frame-shift errors in the genome sequence, or
the organism lacks the pathway.

GapMind relies on the predicted proteins in the genome and does not search the six-frame translation. In most cases, you can search the six-frame translation by clicking on links to Curated BLAST for each step definition (in the per-step page).

For more information, see:

the paper from 2019 on GapMind for amino acid biosynthesis
the 2024 update on GapMind for amino acid biosynthesis
the paper from 2022 on GapMind for carbon sources
the source code
instructions for running GapMind on your computer

If you notice any errors or omissions in the step descriptions, or any questionable results, please let us know

by Morgan Price, Arkin group, Lawrence Berkeley National Laboratory

GapMind for catabolism of small carbon sources