GapMind for catabolism of small carbon sources

 

L-leucine catabolism

Analysis of pathway leucine in 276 genomes

Genome Best path
Acidovorax caeni R-24608 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Actinokineospora bangkokensis 44EHW livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Actinomyces timonensis 7400942 brnQ, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Algiphilus aromaticivorans DG1253 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Algoriphagus aquaeductus T4 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Algoriphagus machipongonensis PR1 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Alicyclobacillus ferrooxydans TC-34 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Alishewanella agri BL06 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Alistipes indistinctus YIT 12060 leuT, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Alistipes shahii WAL 8301 leuT, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Alkalitalea saponilacus SC/BZ-SP2 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Amantichitinum ursilacus IGB-41 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Amphibacillus jilinensis Y1 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Amphritea japonica JAMM 1866 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Amycolatopsis halophila YIM 93223 natA, natB, natC, natD, natE, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Amycolatopsis xylanica CPCC 202699 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Aquimarina agarilytica ZC1 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Aquimarina longa SW024 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Aquimarina macrocephali JAMB N27 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Archaeoglobus sulfaticallidus PM70-1 leuT, ilvE, ofoA, ofoB, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Arcticibacter svalbardensis MN12-7 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Ardenticatena maritima 110S livF, livG, livJ, livH, livM, ilvE, ofoA, ofoB, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Arenimonas metalli CF5-1 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Arenitalea lutea P7-3-5 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Azospirillum humicireducens SgZ-5 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Azospirillum thiophilum BV-S livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Bacillus altitudinis 41KF2b brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Bacillus coahuilensis m4-4 brnQ, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Bacillus cytotoxicus NVH 391-98 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Bacillus horneckiae 1P01SC livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Bacillus okhensis Kh10-101 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Bacillus safensis FO-36b brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Bacillus velezensis CBMB205 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Bacteroides clarus YIT 12056 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Bacteroides faecis MAJ27 leuT, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Bacteroides fluxus YIT 12057 leuT, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Bacteroides oleiciplenus YIT 12058 leuT, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Barnesiella intestinihominis YIT 11860 leuT, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Belnapia rosea CPCC 100156 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Bizionia argentinensis JUB59 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Bradyrhizobium diazoefficiens USDA110 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Brevibacterium jeotgali SJ5-8 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Brucella inopinata BO1 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Brucella microti CCM 4915 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Bryobacter aggregatus MPL3 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Caldicellulosiruptor hydrothermalis 108 livF, livG, livJ, livH, livM, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Caldicellulosiruptor kronotskyensis 2002 livF, livG, livJ, livH, livM, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Carboxydothermus pertinax Ug1 livF, livG, livJ, livH, livM, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Catellicoccus marimammalium M35/04/3 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Chromobacterium vaccinii MWU205 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Chryseobacterium angstadtii KM leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Chryseobacterium arthrosphaerae CC-VM-7 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Chryseobacterium viscerum 687B-08 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Cloacibacillus porcorum CL-84 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Cobetia crustatorum JO1 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Collimonas arenae Ter10 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Collimonas pratensis Ter91 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Collinsella tanakaei YIT 12063 brnQ, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Coprobacter fastidiosus NSB1 leuT, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Corynebacterium deserti GIMN1.010 brnQ, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Corynebacterium frankenforstense ST18 brnQ, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Corynebacterium lactis RW2-5 brnQ, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Croceitalea dokdonensis DOKDO 023 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Cronobacter condimenti 1330 brnQ, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Cronobacter muytjensii ATCC 51329 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Cronobacter universalis NCTC 9529 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Desulfatitalea tepidiphila S28bF aapJ, aapQ, aapM, aapP, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Desulfotomaculum hydrothermale Lam5 livF, livG, livJ, livH, livM, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Dethiosulfovibrio salsuginis USBA 82 livF, livG, livJ, livH, livM, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Devosia chinhatensis IPL18 aapJ, aapQ, aapM, aapP, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Devriesea agamarum IMP2 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Dialister succinatiphilus YIT 11850 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Dietzia timorensis ID05-A0528 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Dokdonella koreensis DS-123 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Domibacillus robiginosus WS 4628 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Duganella sacchari Sac-22 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Dyadobacter tibetensis Y620-1 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Dyella jiangningensis SBZ3-12 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Endozoicomonas montiporae CL-33 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Enterococcus termitis LMG 8895 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Enterorhabdus caecimuris B7 brnQ, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Epibacterium ulvae U95 aapJ, aapQ, aapM, aapP, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Erythrobacter gangjinensis K7-2 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Erythrobacter marinus HWDM-33 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Ethanoligenens harbinense YUAN-3 leuT, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Fervidicella metallireducens AeB livF, livG, livJ, livH, livM, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Fibrella aestuarina BUZ 2 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Flammeovirga pacifica WPAGA1 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Flaviramulus ichthyoenteri Th78 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Flavobacterium beibuense F44-8 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Flavobacterium glycines Gm-149 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Flavobacterium sp. LM5 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Flavobacterium ummariense DS-12 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Frischella perrara PEB0191 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Galbibacter marinus ck-I2-15 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Gallaecimonas xiamenensis 3-C-1 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Geobacter daltonii FRC-32 livF, livG, livJ, livH, livM, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Gillisia marina CBA3202 brnQ, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Gracilibacillus halophilus YIM-C55.5 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Granulicella mallensis MP5ACTX8 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Granulicella tundricola MP5ACTX9 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Hafnia paralvei ATCC 29927 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Haladaptatus cibarius D43 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Halioglobus japonicus S1-36 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Halobacillus alkaliphilus FP5 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Halococcus hamelinensis 100A6 bcaP, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Halomonas salina B6 aapJ, aapQ, aapM, aapP, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Halomonas smyrnensis AAD6 aapJ, aapQ, aapM, aapP, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Halomonas stevensii S18214 aapJ, aapQ, aapM, aapP, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Halomonas titanicae BH1 aapJ, aapQ, aapM, aapP, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Halomonas xinjiangensis TRM 0175 aapJ, aapQ, aapM, aapP, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Halopiger salifodinae KCY07-B2 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Halostagnicola larsenii XH-48 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Haloterrigena daqingensis JX313 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Herbaspirillum aquaticum IEH 4430 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Hippea alviniae EP5-r livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Hippea jasoniae Mar08-272r livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Hoeflea phototrophica DFL-43 aapJ, aapQ, aapM, aapP, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Hyphomicrobium nitrativorans NL23 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Imtechella halotolerans K1 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Indibacter alkaliphilus LW1 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Jannaschia aquimarina GSW-M26 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Jeotgalibacillus soli P9 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Kangiella geojedonensis YCS-5 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Knoellia flava TL1 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Kocuria flava HO-9041 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Kocuria turfanensis HO-9042 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Laceyella sediminis RHA1 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Lacinutrix algicola AKS293 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Lacinutrix himadriensis E4-9a brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Lacinutrix mariniflava AKS432 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Lactobacillus curieae CCTCC M 2011381 bcaP, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Lactobacillus delbrueckii ZN7a-9 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Lactobacillus hokkaidonensis LOOC260 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Lactobacillus oryzae SG293 bcaP, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Lactobacillus pobuzihii E100301 bcaP, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Lactobacillus shenzhenensis LY-73 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Lactobacillus silagei IWT126 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Leeuwenhoekiella blandensis MED217 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Lentibacillus jeotgali Grbi brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Limnohabitans curvus MWH-C5 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Limnohabitans parvus II-B4 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Listeria fleischmannii LU2006-1 bcaP, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Luteimonas huabeiensis HB2 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Luteipulveratus mongoliensis MN07-A0370 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Lutibaculum baratangense AMV1 aapJ, aapQ, aapM, aapP, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Lysobacter daejeonensis GH1-9 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Magnetovibrio blakemorei MV-1 aapJ, aapQ, aapM, aapP, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Marinicella litoralis KMM 3900 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Mariniradius saccharolyticus AK6 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Marinobacter algicola DG893 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Marinobacter guineae M3B livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Marinobacter psychrophilus 20041 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Marinomonas arctica 328 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Marivita geojedonensis DPG-138 natA, natB, natC, natD, natE, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Martelella endophytica YC6887 aapJ, aapQ, aapM, aapP, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Megamonas funiformis YIT 11815 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Mesorhizobium ciceri WSM1271 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Methanobacterium arcticum M2 leuT, ilvE, vorA, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Methanobacterium veterum MK4 leuT, ilvE, vorA, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Methanocella arvoryzae MRE50 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Methanococcus aeolicus Nankai-3 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Methanoculleus horonobensis T10 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Methanolinea tarda NOBI-1 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Methanosarcina soligelidi SMA-21 leuT, ilvE, vorA, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Methanospirillum lacunae Ki8-1 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Methanospirillum stamsii Pt1 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Methylibium petroleiphilum PM1 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Methylobacterium gossipiicola Gh-105 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Methylocapsa aurea KYG livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Methylotenera versatilis 301 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Microbacterium profundi Shh49 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Microvirga lotononidis WSM3557 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Moritella dasanensis ArB 0140 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Mucilaginibacter gossypii Gh-67 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Mucilaginibacter gossypiicola Gh-48 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Mucilaginibacter mallensis MP1X4 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Nafulsella turpanensis ZLM-10 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Natronomonas moolapensis 8.8.11 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Nautilia profundicola AmH livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Neiella marina J221 brnQ, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Neptunomonas antarctica S3-22 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Nocardioides daejeonensis MJ31 natA, natB, natC, natD, natE, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Nocardioides dokdonensis FR1436 natA, natB, natC, natD, natE, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Nocardiopsis baichengensis YIM 90130 natA, natB, natC, natD, natE, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Nocardiopsis gilva YIM 90087 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Novosphingobium barchaimii LL02 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Novosphingobium fuchskuhlense FNE08-7 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Novosphingobium lindaniclasticum LE124 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Oceanisphaera arctica V1-41 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Ochrobactrum rhizosphaerae PR17 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Ochrobactrum thiophenivorans DSM 7216 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Oscillibacter ruminantium GH1 livF, livG, livJ, livH, livM, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Paenisporosarcina indica PN2 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Palaeococcus pacificus DY20341 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Paludibacter propionicigenes WB4 leuT, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Pandoraea thiooxydans ATSB16 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Pantoea rwandensis LMG 26275 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Pedobacter arcticus A12 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Photobacterium gaetbulicola Gung47 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Photobacterium jeanii R-40508 brnQ, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Phyllobacterium brassicacearum STM 196 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Phyllobacterium endophyticum PEPV15 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Phyllobacterium leguminum ORS 1419 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Planktomarina temperata RCA23 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Planococcus halocryophilus Or1 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Pleomorphomonas diazotrophica R5-392 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Polaribacter dokdonensis DSW-5 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Pontibacillus litoralis JSM 072002 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Pontibacter lucknowensis DM9 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Pontibacter ramchanderi LP43 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Pontimonas salivibrio CL-TW6 natA, natB, natC, natD, natE, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Porphyrobacter dokdonensis DSW-74 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Pseudoalteromonas arctica A 37-1-2 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Pseudomonas baetica a390 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Pseudomonas litoralis 2SM5 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Pseudomonas taeanensis MS-3 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Pseudovibrio axinellae Ad2 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Psychrobacter arcticus 273-4 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Psychrobacter cryohalolentis K5 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Psychromonas ingrahamii 37 aapJ, aapQ, aapM, aapP, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Psychromonas ossibalaenae JAMM 0738 brnQ, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Rhizobium freirei PRF 81 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Rhizobium grahamii CCGE 502 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Rhizobium subbaraonis JC85 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Rhodanobacter denitrificans 2APBS1 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Rhodobacter johrii JA192 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Rhodobacter maris JA276 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Rhodobacter ovatus JA234 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Rhodobacter viridis JA737 aapJ, aapQ, aapM, aapP, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Rhodococcus qingshengii djl-6-2 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Rhodopseudomonas pseudopalustris DSM 123 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Roseateles aquatilis CCUG 48205 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Roseivirga spongicola UST030701-084 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Rubrivirga marina SAORIC-28 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Ruegeria conchae TW15 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Saccharomonospora marina XMU15 natA, natB, natC, natD, natE, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Salinicoccus carnicancri Crm leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Serinicoccus profundi MCCC 1A05965 natA, natB, natC, natD, natE, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Shewanella halifaxensis HAW-EB4 brnQ, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Skermanella stibiiresistens SB22 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Snodgrassella alvi wkB2 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Sphaerochaeta globosa Buddy livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Sphaerochaeta pleomorpha Grapes livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Sphingobium baderi LL03 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Sphingobium czechense LL01 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Sphingobium quisquiliarum P25 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Sphingomonas histidinilytica UM2 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Sphingomonas indica Dd16 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Sphingomonas laterariae LNB2 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Sphingopyxis indica DS15 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Sphingopyxis terrae UI2 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Sporolactobacillus vineae SL153 bcaP, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Streptacidiphilus oryzae TH49 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Streptococcus anginosus CCUG 39159 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Streptococcus massiliensis 4401825 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Streptococcus oralis 7747 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Streptococcus oralis AZ_3a livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Streptomyces kebangsaanensis SUK12 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Succinatimonas hippei YIT 12066 brnQ, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Sulfurimonas gotlandica GD1 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Tatumella morbirosei LMG 23360 brnQ, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Thauera humireducens SgZ-1 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Thermoactinomyces daqus H-18 leuT, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Thermobifida halotolerans YIM 90462 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Thermodesulfovibrio aggregans TGE-P1 leuT, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Thermophagus xiamenensis HS1 leuT, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Thermovenabulum gondwanense R270 leuT, ilvE, vorA*, vorB, vorC, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Thioclava dalianensis DLFJ1-1 aapJ, aapQ, aapM, aapP, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Thiohalospira halophila HL 3 leuT, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Tistlia consotensis USBA 355 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Vagococcus penaei CD276 livF, livG, livJ, livH, livM, ilvE, bkdA, bkdB, bkdC, lpd, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Verminephrobacter eiseniae EF01-2 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB
Weissella oryzae SG25 bcaP, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Williamsia sterculiae CPCC 203464 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, aacS, atoB
Yersinia intermedia Y228 livF, livG, livJ, livH, livM, ilvE, ofo, liuA, liuB, liuD, liuC, liuE, atoA, atoD, atoB

Confidence: high confidence medium confidence low confidence
transporter – transporters and PTS systems are shaded because predicting their specificity is particularly challenging.

This GapMind analysis is from Sep 24 2021. The underlying query database was built on Sep 17 2021.

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About GapMind

Each pathway is defined by a set of rules based on individual steps or genes. Candidates for each step are identified by using ublast (a fast alternative to protein BLAST) against a database of manually-curated proteins (most of which are experimentally characterized) or by using HMMer with enzyme models (usually from TIGRFam). Ublast hits may be split across two different proteins.

A candidate for a step is "high confidence" if either:

where "other" refers to the best ublast hit to a sequence that is not annotated as performing this step (and is not "ignored").

Otherwise, a candidate is "medium confidence" if either:

Other blast hits with at least 50% coverage are "low confidence."

Steps with no high- or medium-confidence candidates may be considered "gaps." For the typical bacterium that can make all 20 amino acids, there are 1-2 gaps in amino acid biosynthesis pathways. For diverse bacteria and archaea that can utilize a carbon source, there is a complete high-confidence catabolic pathway (including a transporter) just 38% of the time, and there is a complete medium-confidence pathway 63% of the time. Gaps may be due to:

GapMind relies on the predicted proteins in the genome and does not search the six-frame translation. In most cases, you can search the six-frame translation by clicking on links to Curated BLAST for each step definition (in the per-step page).

For more information, see:

If you notice any errors or omissions in the step descriptions, or any questionable results, please let us know

by Morgan Price, Arkin group, Lawrence Berkeley National Laboratory