GapMind for catabolism of small carbon sources

 

Protein WP_054342016.1 in Neptunomonas antarctica S3-22

Annotation: NCBI__GCF_001305295.1:WP_054342016.1

Length: 563 amino acids

Source: GCF_001305295.1 in NCBI

Candidate for 5 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
2-deoxy-D-ribonate catabolism aacS hi Acetoacetate--CoA ligase (EC 6.2.1.16) (characterized) 57% 97% 664.8 Medium-chain acyl-CoA ligase ACSF2, mitochondrial; EC 6.2.1.2 44% 497.7
2-deoxy-D-ribose catabolism aacS hi Acetoacetate--CoA ligase (EC 6.2.1.16) (characterized) 57% 97% 664.8 Medium-chain acyl-CoA ligase ACSF2, mitochondrial; EC 6.2.1.2 44% 497.7
L-leucine catabolism aacS hi Acetoacetate--CoA ligase (EC 6.2.1.16) (characterized) 57% 97% 664.8 Medium-chain acyl-CoA ligase ACSF2, mitochondrial; EC 6.2.1.2 44% 497.7
L-phenylalanine catabolism aacS hi Acetoacetate--CoA ligase (EC 6.2.1.16) (characterized) 57% 97% 664.8 Medium-chain acyl-CoA ligase ACSF2, mitochondrial; EC 6.2.1.2 44% 497.7
L-tyrosine catabolism aacS hi Acetoacetate--CoA ligase (EC 6.2.1.16) (characterized) 57% 97% 664.8 Medium-chain acyl-CoA ligase ACSF2, mitochondrial; EC 6.2.1.2 44% 497.7

Sequence Analysis Tools

Software error:

Failed to contact NCBI datasets API at https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCF_001305295.1/dataset_report

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