GapMind for catabolism of small carbon sources

 

Protein WP_082908505.1 in Dietzia timorensis ID05-A0528

Annotation: NCBI__GCF_001659785.1:WP_082908505.1

Length: 507 amino acids

Source: GCF_001659785.1 in NCBI

Candidate for 27 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
4-hydroxybenzoate catabolism adh hi Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 (characterized) 56% 99% 532.7 vanillin dehydrogenase (EC 1.2.1.67) 45% 400.2
2'-deoxyinosine catabolism adh hi Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 (characterized) 56% 99% 532.7 vanillin dehydrogenase (EC 1.2.1.67) 45% 400.2
2-deoxy-D-ribose catabolism adh hi Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 (characterized) 56% 99% 532.7 vanillin dehydrogenase (EC 1.2.1.67) 45% 400.2
ethanol catabolism adh hi Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 (characterized) 56% 99% 532.7 vanillin dehydrogenase (EC 1.2.1.67) 45% 400.2
L-threonine catabolism adh hi Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 (characterized) 56% 99% 532.7 vanillin dehydrogenase (EC 1.2.1.67) 45% 400.2
thymidine catabolism adh hi Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 (characterized) 56% 99% 532.7 vanillin dehydrogenase (EC 1.2.1.67) 45% 400.2
L-tryptophan catabolism adh hi Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 (characterized) 56% 99% 532.7 vanillin dehydrogenase (EC 1.2.1.67) 45% 400.2
L-arginine catabolism patD med aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 40% 95% 327 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-citrulline catabolism patD med aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 40% 95% 327 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
putrescine catabolism patD med aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 40% 95% 327 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-phenylalanine catabolism pad-dh lo phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) (characterized) 40% 99% 343.6 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-arginine catabolism davD lo glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (characterized) 35% 96% 298.1 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-citrulline catabolism davD lo glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (characterized) 35% 96% 298.1 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-lysine catabolism davD lo glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (characterized) 35% 96% 298.1 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-proline catabolism davD lo glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (characterized) 35% 96% 298.1 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-fucose catabolism aldA lo NAD(P)+ L-lactaldehyde dehydrogenase (EC 1.2.1.22) (characterized) 36% 94% 294.3 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-rhamnose catabolism aldA lo NAD(P)+ L-lactaldehyde dehydrogenase (EC 1.2.1.22) (characterized) 36% 94% 294.3 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-threonine catabolism aldA lo NAD(P)+ L-lactaldehyde dehydrogenase (EC 1.2.1.22) (characterized) 36% 94% 294.3 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-valine catabolism mmsA lo Malonate-semialdehyde dehydrogenase 1; MSA dehydrogenase 1; EC 1.2.1.-; Methylmalonate-semialdehyde dehydrogenase 1; MMSA dehydrogenase 1; MSDH 1; EC 1.2.1.27 (uncharacterized) 30% 95% 228 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-arginine catabolism putA lo L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 31% 96% 213.4 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-arginine catabolism rocA lo L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 31% 96% 213.4 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-citrulline catabolism putA lo L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 31% 96% 213.4 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-citrulline catabolism rocA lo L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 31% 96% 213.4 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-proline catabolism putA lo L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized) 31% 96% 213.4 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-arginine catabolism astD lo N-succinylglutamate 5-semialdehyde dehydrogenase; EC 1.2.1.71; Succinylglutamic semialdehyde dehydrogenase; SGSD (uncharacterized) 31% 93% 189.1 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-citrulline catabolism astD lo N-succinylglutamate 5-semialdehyde dehydrogenase; EC 1.2.1.71; Succinylglutamic semialdehyde dehydrogenase; SGSD (uncharacterized) 31% 93% 189.1 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7
L-lysine catabolism amaB lo L-piperidine-6-carboxylate dehydrogenase; EC 1.2.1.21 (characterized, see rationale) 30% 92% 180.6 Geranial dehydrogenase; GaDH; Geraniol oxidation pathway protein B; EC 1.2.1.86 56% 532.7

Sequence Analysis Tools

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