GapMind for catabolism of small carbon sources

 

Protein WP_104913708.1 in Pontimonas salivibrio CL-TW6

Annotation: NCBI__GCF_002950575.1:WP_104913708.1

Length: 348 amino acids

Source: GCF_002950575.1 in NCBI

Candidate for 87 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
putrescine catabolism potA med spermidine/putrescine ABC transporter, ATP-binding protein PotA; EC 3.6.3.31 (characterized) 48% 93% 292.7 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-maltose catabolism thuK med Trehalose/maltose import ATP-binding protein MalK; EC 7.5.2.1 (characterized) 41% 91% 241.9 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
trehalose catabolism thuK med Trehalose/maltose import ATP-binding protein MalK; EC 7.5.2.1 (characterized) 41% 91% 241.9 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-maltose catabolism malK1 med MalK; aka Sugar ABC transporter, ATP-binding protein, component of The maltose, maltotriose, mannotetraose (MalE1)/maltose, maltotriose, trehalose (MalE2) porter (Nanavati et al., 2005). For MalG1 (823aas) and MalG2 (833aas), the C-terminal transmembrane domain with 6 putative TMSs is preceded by a single N-terminal TMS and a large (600 residue) hydrophilic region showing sequence similarity to MLP1 and 2 (9.A.14; e-12 & e-7) as well as other proteins (characterized) 42% 91% 237.7 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-mannitol catabolism mtlK med ABC transporter for D-mannitol and D-mannose, ATPase component (characterized) 41% 82% 233.8 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-sorbitol (glucitol) catabolism mtlK med ABC transporter for D-Sorbitol, ATPase component (characterized) 41% 91% 228.8 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-maltose catabolism aglK med ABC transporter for D-Maltose and D-Trehalose, ATPase component (characterized) 42% 87% 226.9 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
sucrose catabolism aglK med ABC transporter for D-Maltose and D-Trehalose, ATPase component (characterized) 42% 87% 226.9 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
trehalose catabolism aglK med ABC transporter for D-Maltose and D-Trehalose, ATPase component (characterized) 42% 87% 226.9 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
N-acetyl-D-glucosamine catabolism SMc02869 med N-Acetyl-D-glucosamine ABC transport system, ATPase component (characterized) 41% 89% 226.1 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-fucose catabolism SM_b21106 med ABC transporter for L-Fucose, ATPase component (characterized) 41% 78% 226.1 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-glucosamine (chitosamine) catabolism SMc02869 med N-Acetyl-D-glucosamine ABC transport system, ATPase component (characterized) 41% 89% 226.1 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-maltose catabolism malK med Maltose-transporting ATPase (EC 3.6.3.19) (characterized) 42% 79% 225.7 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
lactose catabolism lacK med ABC transporter for Lactose, ATPase component (characterized) 42% 78% 225.3 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-cellobiose catabolism gtsD med GtsD (GLcK), component of Glucose porter, GtsABCD (characterized) 41% 77% 223.8 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-glucose catabolism gtsD med GtsD (GLcK), component of Glucose porter, GtsABCD (characterized) 41% 77% 223.8 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
lactose catabolism gtsD med GtsD (GLcK), component of Glucose porter, GtsABCD (characterized) 41% 77% 223.8 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-maltose catabolism gtsD med GtsD (GLcK), component of Glucose porter, GtsABCD (characterized) 41% 77% 223.8 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-maltose catabolism malK_Bb med ABC-type maltose transport, ATP binding protein (characterized, see rationale) 41% 78% 223.8 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
sucrose catabolism gtsD med GtsD (GLcK), component of Glucose porter, GtsABCD (characterized) 41% 77% 223.8 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
sucrose catabolism thuK med ThuK aka RB0314 aka SMB20328, component of Trehalose/maltose/sucrose porter (trehalose inducible) (characterized) 44% 77% 223.8 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
trehalose catabolism gtsD med GtsD (GLcK), component of Glucose porter, GtsABCD (characterized) 41% 77% 223.8 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-histidine catabolism hutV med ABC transporter for L-Histidine, ATPase component (characterized) 42% 82% 178.3 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-histidine catabolism Ac3H11_2560 med ABC transporter for L-Histidine, ATPase component (characterized) 44% 83% 167.5 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-mannose catabolism TT_C0211 lo Sugar-binding transport ATP-binding protein aka MalK1 aka TT_C0211, component of The trehalose/maltose/sucrose/palatinose porter (TTC1627-9) plus MalK1 (ABC protein, shared with 3.A.1.1.24) (Silva et al. 2005; Chevance et al., 2006). The receptor (TTC1627) binds disaccharide alpha-glycosides, namely trehalose (alpha-1,1), sucrose (alpha-1,2), maltose (alpha-1,4), palatinose (alpha-1,6) and glucose (characterized) 40% 91% 239.2 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
xylitol catabolism Dshi_0546 lo ABC transporter for Xylitol, ATPase component (characterized) 39% 99% 233.8 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-arabinose catabolism xacJ lo Xylose/arabinose import ATP-binding protein XacJ; EC 7.5.2.13 (characterized, see rationale) 39% 91% 229.2 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-xylose catabolism gtsD lo ABC transporter for D-Glucose-6-Phosphate, ATPase component (characterized) 38% 87% 228 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-maltose catabolism malK_Aa lo ABC-type maltose transporter (EC 7.5.2.1) (characterized) 39% 88% 224.6 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-maltose catabolism musK lo ABC-type maltose transporter (EC 7.5.2.1) (characterized) 37% 93% 220.3 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-cellobiose catabolism msiK lo MsiK protein, component of The cellobiose/cellotriose (and possibly higher cellooligosaccharides), CebEFGMsiK [MsiK functions to energize several ABC transporters including those for maltose/maltotriose and trehalose] (characterized) 50% 58% 219.5 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-arabinose catabolism xacK lo Xylose/arabinose import ATP-binding protein XacK; EC 7.5.2.13 (characterized, see rationale) 37% 86% 217.2 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
trehalose catabolism malK lo MsmK aka SMU.882, component of The raffinose/stachyose transporter, MsmEFGK (MalK (3.A.1.1.27) can probably substitute for MsmK; Webb et al., 2008). This system may also transport melibiose, isomaltotriose and sucrose as well as isomaltosaccharides (characterized) 46% 65% 214.9 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-galactose catabolism PfGW456L13_1897 lo ABC transporter for D-Galactose and D-Glucose, ATPase component (characterized) 37% 82% 213.4 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-glucosamine (chitosamine) catabolism SM_b21216 lo ABC transporter for D-Glucosamine, ATPase component (characterized) 38% 89% 210.7 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-maltose catabolism malK_Sm lo MalK, component of Maltose/Maltotriose/maltodextrin (up to 7 glucose units) transporters MalXFGK (MsmK (3.A.1.1.28) can probably substitute for MalK; Webb et al., 2008) (characterized) 40% 82% 209.5 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-cellobiose catabolism aglK' lo Maltose/maltodextrin import ATP-binding protein; EC 3.6.3.19 (characterized, see rationale) 38% 95% 208 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-glucose catabolism aglK' lo Maltose/maltodextrin import ATP-binding protein; EC 3.6.3.19 (characterized, see rationale) 38% 95% 208 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
lactose catabolism aglK' lo Maltose/maltodextrin import ATP-binding protein; EC 3.6.3.19 (characterized, see rationale) 38% 95% 208 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-maltose catabolism aglK' lo Maltose/maltodextrin import ATP-binding protein; EC 3.6.3.19 (characterized, see rationale) 38% 95% 208 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
sucrose catabolism aglK' lo Maltose/maltodextrin import ATP-binding protein; EC 3.6.3.19 (characterized, see rationale) 38% 95% 208 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
trehalose catabolism aglK' lo Maltose/maltodextrin import ATP-binding protein; EC 3.6.3.19 (characterized, see rationale) 38% 95% 208 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-cellobiose catabolism SMc04256 lo ABC transporter for D-Cellobiose and D-Salicin, ATPase component (characterized) 45% 65% 206.5 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
xylitol catabolism HSERO_RS17020 lo ABC-type sugar transport system, ATPase component protein (characterized, see rationale) 36% 82% 204.1 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
trehalose catabolism treV lo TreV, component of Trehalose porter (characterized) 37% 91% 202.6 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-arabinose catabolism araV lo AraV, component of Arabinose, fructose, xylose porter (characterized) 40% 70% 188.7 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-fructose catabolism araV lo AraV, component of Arabinose, fructose, xylose porter (characterized) 40% 70% 188.7 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
sucrose catabolism araV lo AraV, component of Arabinose, fructose, xylose porter (characterized) 40% 70% 188.7 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-xylose catabolism araV lo AraV, component of Arabinose, fructose, xylose porter (characterized) 40% 70% 188.7 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-proline catabolism opuBA lo BusAA, component of Uptake system for glycine-betaine (high affinity) and proline (low affinity) (OpuAA-OpuABC) or BusAA-ABC of Lactococcus lactis). BusAA, the ATPase subunit, has a C-terminal tandem cystathionine β-synthase (CBS) domain which is the cytoplasmic K+ sensor for osmotic stress (osmotic strength)while the BusABC subunit has the membrane and receptor domains fused to each other (Biemans-Oldehinkel et al., 2006; Mahmood et al., 2006; Gul et al. 2012). An N-terminal amphipathic α-helix of OpuA is necessary for high activity but is not critical for biogenesis or the ionic regulation of transport (characterized) 40% 61% 184.1 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-cellobiose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 31% 99% 181 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-galactose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 31% 99% 181 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-glucose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 31% 99% 181 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
lactose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 31% 99% 181 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-maltose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 31% 99% 181 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-mannose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 31% 99% 181 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
sucrose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 31% 99% 181 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
trehalose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 31% 99% 181 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-proline catabolism proV lo Glycine betaine/proline betaine transport system ATP-binding protein ProV (characterized) 37% 62% 173.7 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-proline catabolism hutV lo HutV aka HISV aka R02702 aka SMC00670, component of Uptake system for hisitidine, proline, proline-betaine and glycine-betaine (characterized) 39% 83% 166 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-glutamate catabolism gltL lo GluA aka CGL1950, component of Glutamate porter (characterized) 38% 98% 165.6 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
glycerol catabolism glpT lo GlpT, component of Glycerol uptake porter, GlpSTPQV (characterized) 32% 78% 157.5 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-glucosamine (chitosamine) catabolism AO353_21725 lo ABC transporter for D-Glucosamine, putative ATPase component (characterized) 35% 97% 156.4 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-arginine catabolism artP lo BgtA aka SLR1735, component of Arginine/lysine/histidine/glutamine porter (characterized) 36% 96% 154.1 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-histidine catabolism bgtA lo BgtA aka SLR1735, component of Arginine/lysine/histidine/glutamine porter (characterized) 36% 96% 154.1 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-lysine catabolism hisP lo BgtA aka SLR1735, component of Arginine/lysine/histidine/glutamine porter (characterized) 36% 96% 154.1 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
glycerol catabolism glpS lo GlpS, component of Glycerol uptake porter, GlpSTPQV (characterized) 31% 89% 153.3 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
D-alanine catabolism Pf6N2E2_5405 lo ABC transporter for D-Alanine, ATPase component (characterized) 34% 95% 152.5 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-histidine catabolism aapP lo ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (characterized) 35% 94% 149.1 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-asparagine catabolism aapP lo AapP, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) (characterized) 35% 94% 147.9 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-asparagine catabolism aatP lo Glutamate/aspartate transport ATP-binding protein GltL aka B0652, component of Glutamate/aspartate porter (characterized) 35% 98% 147.9 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-aspartate catabolism aapP lo AapP, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) (characterized) 35% 94% 147.9 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-aspartate catabolism aatP lo Glutamate/aspartate transport ATP-binding protein GltL aka B0652, component of Glutamate/aspartate porter (characterized) 35% 98% 147.9 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-glutamate catabolism aapP lo AapP, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) (characterized) 35% 94% 147.9 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-leucine catabolism aapP lo AapP, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) (characterized) 35% 94% 147.9 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-proline catabolism aapP lo AapP, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) (characterized) 35% 94% 147.9 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-histidine catabolism BPHYT_RS24015 lo ABC transporter related (characterized, see rationale) 36% 91% 146.4 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-asparagine catabolism bgtA lo ATPase (characterized, see rationale) 35% 95% 145.6 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-aspartate catabolism bgtA lo ATPase (characterized, see rationale) 35% 95% 145.6 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-asparagine catabolism glnQ lo Glutamine ABC transporter ATP-binding protein, component of Glutamine transporter, GlnQP. Takes up glutamine, asparagine and glutamate which compete for each other for binding both substrate and the transmembrane protein constituent of the system (Fulyani et al. 2015). Tandem substrate binding domains (SBDs) differ in substrate specificity and affinity, allowing cells to efficiently accumulate different amino acids via a single ABC transporter. Analysis revealed the roles of individual residues in determining the substrate affinity (characterized) 33% 96% 143.3 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-alanine catabolism braF lo High-affinity branched-chain amino acid transport ATP-binding protein BraF, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 31% 99% 129.4 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-isoleucine catabolism livG lo High-affinity branched-chain amino acid transport ATP-binding protein BraF, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 31% 99% 129.4 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-leucine catabolism livG lo High-affinity branched-chain amino acid transport ATP-binding protein BraF, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 31% 99% 129.4 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-serine catabolism braF lo High-affinity branched-chain amino acid transport ATP-binding protein BraF, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 31% 99% 129.4 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-threonine catabolism braF lo High-affinity branched-chain amino acid transport ATP-binding protein BraF, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 31% 99% 129.4 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-valine catabolism livG lo High-affinity branched-chain amino acid transport ATP-binding protein BraF, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 31% 99% 129.4 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3
L-phenylalanine catabolism livG lo High-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG (characterized, see rationale) 30% 98% 124.8 Uncharacterized ABC transporter ATP-binding protein YdcT 51% 319.3

Sequence Analysis Tools

View WP_104913708.1 at NCBI

Find papers: PaperBLAST

Find functional residues: SitesBLAST

Search for conserved domains

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Compare to protein structures

Predict transmenbrane helices: Phobius

Predict protein localization: PSORTb

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Sequence

MSTGQESTPGFVSLRGVSKNFDGVTAVNKLDLDIPSGEFFSMLGPSGSGKTTVLRMIAGF
ETVTAGKISIDGEDVTELAPFDRTVNTVFQDYALFPHMTIQENVEYGLRTRREPKAQRAE
KALEAIDRVKLAHLANQLPHQLSGGQRQRIALARALVLRPKVLLLDEPLGALDKQLREKM
QIELKSIQREAGITFIFVTHDQEEAMTMSDRIAVFNEGRIEQLGTPVEVYEKPASSFVAG
FLGVSNLLSGDQAKALVGRDELVNLRPERLRLHASDYVAAAGETTTEGVVTEVIYTGAHT
NFVVQAQADSRLIATSLNEESPEQLHSFVPGDKVVVAWRNHHVATIPA

This GapMind analysis is from Sep 24 2021. The underlying query database was built on Sep 17 2021.

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About GapMind

Each pathway is defined by a set of rules based on individual steps or genes. Candidates for each step are identified by using ublast (a fast alternative to protein BLAST) against a database of manually-curated proteins (most of which are experimentally characterized) or by using HMMer with enzyme models (usually from TIGRFam). Ublast hits may be split across two different proteins.

A candidate for a step is "high confidence" if either:

where "other" refers to the best ublast hit to a sequence that is not annotated as performing this step (and is not "ignored").

Otherwise, a candidate is "medium confidence" if either:

Other blast hits with at least 50% coverage are "low confidence."

Steps with no high- or medium-confidence candidates may be considered "gaps." For the typical bacterium that can make all 20 amino acids, there are 1-2 gaps in amino acid biosynthesis pathways. For diverse bacteria and archaea that can utilize a carbon source, there is a complete high-confidence catabolic pathway (including a transporter) just 38% of the time, and there is a complete medium-confidence pathway 63% of the time. Gaps may be due to:

GapMind relies on the predicted proteins in the genome and does not search the six-frame translation. In most cases, you can search the six-frame translation by clicking on links to Curated BLAST for each step definition (in the per-step page).

For more information, see:

If you notice any errors or omissions in the step descriptions, or any questionable results, please let us know

by Morgan Price, Arkin group, Lawrence Berkeley National Laboratory