GapMind for catabolism of small carbon sources

 

Protein WP_108359047.1 in Limnohabitans curvus MWH-C5

Annotation: NCBI__GCF_003063475.1:WP_108359047.1

Length: 234 amino acids

Source: GCF_003063475.1 in NCBI

Candidate for 8 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
2-deoxy-D-ribonate catabolism atoA hi acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (characterized) 77% 100% 357.5
2-deoxy-D-ribose catabolism atoA hi acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (characterized) 77% 100% 357.5
L-leucine catabolism atoA hi acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (characterized) 77% 100% 357.5
L-phenylalanine catabolism atoA hi acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (characterized) 77% 100% 357.5
L-tyrosine catabolism atoA hi acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (characterized) 77% 100% 357.5
4-hydroxybenzoate catabolism pcaI med 3-oxoadipate CoA-transferase subunit A; EC 2.8.3.6 (characterized) 46% 94% 194.5 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) 77% 357.5
L-tryptophan catabolism pcaI med 3-oxoadipate CoA-transferase subunit A; EC 2.8.3.6 (characterized) 46% 94% 194.5 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) 77% 357.5
L-lysine catabolism ctfA lo Butyrate--acetoacetate CoA-transferase subunit A; Short=Coat A; EC 2.8.3.9 (characterized, see rationale) 39% 96% 174.1 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) 77% 357.5

Sequence Analysis Tools

Software error:

Failed to contact NCBI datasets API at https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCF_003063475.1/dataset_report

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