Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 50 curated entries in PaperBLAST's database that match '1.1.1.25' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_0043: shikimate 5-dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q88RQ5: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida

55% id,
99% cov

AROE_VIBCH / Q9KVT3: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae

53% id,
97% cov

AROE_ECOLI / P15770: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli
AroE / b3281: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli
aroE / P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli
P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli

51% id,
100% cov

More...

Shewana3_0768: glutamyl-tRNA reductase (RefSeq)
is similar to:
PaperBLAST

Q88RQ5: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida

25% id,
47% cov

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana

29% id,
23% cov

A0A168S2G5: shikimate dehydrogenase (EC 1.1.1.25) from Vitis vinifera

32% id,
20% cov

More...

Shewana3_1975: 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq)
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

38% id,
28% cov

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans

39% id,
27% cov

Q6W3D0: shikimate dehydrogenase (EC 1.1.1.25) from Toxoplasma gondii

41% id,
2% cov

Shewana3_3893: 3-dehydroquinate synthase (RefSeq)
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans

40% id,
22% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

32% id,
23% cov

Q6W3D0: shikimate dehydrogenase (EC 1.1.1.25) from Toxoplasma gondii

37% id,
4% cov

Shewana3_0130: molybdopterin biosynthesis protein MoeB (RefSeq)
is similar to:
PaperBLAST

A4QB65: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Corynebacterium glutamicum

28% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4671632-4672729 (frame -1) on 248374
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans
Also see hits to annotated proteins above

39% id,
23% cov

Q6W3D0: shikimate dehydrogenase (EC 1.1.1.25) from Toxoplasma gondii
Also see hits to annotated proteins above

38% id,
4% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory