Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 148 curated entries in PaperBLAST's database that match '1.1.1.28'.

These curated entries have 116 distinct sequences.

Running ublast with E ≤ 0.01

Found 33 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3319: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq)
is similar to:
PaperBLAST

Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis

97% id,
100% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

63% id,
100% cov

A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

63% id,
100% cov

More...

Shewana3_1837: alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

FRMA_ECOLI / P25437: S-(hydroxymethyl)glutathione dehydrogenase; Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; EC 1.1.1.284; EC 1.1.1.1; EC 1.1.1.- from Escherichia coli
AdhC / b0356: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli
frmA / GB|BAA22412.1: S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.-; EC 1.1.1.1; EC 1.1.1.284 from Escherichia coli
frmA / P25437: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli

71% id,
100% cov

ADHX_SPAAU / P79896: Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Sparus aurata

67% id,
99% cov

ADHH_GADMO / P81600: Alcohol dehydrogenase class-3 chain H; Alcohol dehydrogenase class-III chain H; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Gadus morhua

67% id,
99% cov

More...

Shewana3_2890: isocitrate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

HICDH_THET2 / Q72IW9: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus
HICDH_THET8 / Q5SIJ1: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus

45% id,
98% cov

IDH-V / Q945K7: NAD+-dependent isocitrate dehydrogenase catalytic subunit (EC 1.1.1.286) from Arabidopsis thaliana

49% id,
88% cov

IDH3A / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (EC 1.1.1.286) from Homo sapiens

47% id,
91% cov

More...

Shewana3_3760: 3-isopropylmalate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

HICDH_THET2 / Q72IW9: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus
HICDH_THET8 / Q5SIJ1: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus

41% id,
94% cov

Q5JFV8: isocitrate-homoisocitrate dehydrogenase (EC 1.1.1.286) from Thermococcus kodakarensis

38% id,
88% cov

HICDH_PYRHO / O59394: Isocitrate/homoisocitrate dehydrogenase; HICDH; Beta-decarboxylating dehydrogenase; EC 1.1.1.286 from Pyrococcus horikoshii

34% id,
92% cov

More...

Shewana3_2558: 3-oxoacyl-[acyl-carrier-protein] reductase (RefSeq)
is similar to:
PaperBLAST

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

37% id,
97% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

36% id,
97% cov

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

38% id,
88% cov

More...

Shewana3_0303: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

35% id,
97% cov

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

33% id,
97% cov

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa

32% id,
93% cov

More...

Shewana3_3599: aldo/keto reductase (RefSeq)
is similar to:
PaperBLAST

GR_BACSU / O32210: Glyoxal reductase; GR; Methylglyoxal reductase; EC 1.1.1.-; EC 1.1.1.283 from Bacillus subtilis
yvgN / O32210: glyoxal/methylglyoxal reductase (EC 1.1.1.283; EC 1.1.1.91) from Bacillus subtilis

37% id,
93% cov

Q6IMN8: methylglyoxal reductase (NADPH) (EC 1.1.1.283) from Dictyostelium discoideum

31% id,
94% cov

DMAS1_ORYSJ / Q10PE7: Deoxymugineic acid synthase 1; OsDMAS1; EC 1.1.1.285 from Oryza sativa

29% id,
95% cov

More...

Shewana3_2765: 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

34% id,
98% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

33% id,
98% cov

A0A0K1H1P6: xanthoxin dehydrogenase (EC 1.1.1.288) from Pisum sativum

31% id,
92% cov

More...

Shewana3_2690: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

36% id,
88% cov

A0A0K1H1P6: xanthoxin dehydrogenase (EC 1.1.1.288) from Pisum sativum

33% id,
92% cov

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

32% id,
97% cov

More...

Shewana3_0327: 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

32% id,
94% cov

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

31% id,
96% cov

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

34% id,
85% cov

More...

Shewana3_3201: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq)
is similar to:
PaperBLAST

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

34% id,
89% cov

A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

34% id,
89% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

36% id,
84% cov

More...

Shewana3_0043: shikimate 5-dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q88K85: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

31% id,
94% cov

Q88JP1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

27% id,
96% cov

A4QB65: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Corynebacterium glutamicum

27% id,
94% cov

More...

Shewana3_1982: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

30% id,
96% cov

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

32% id,
89% cov

A0A0K1H1P6: xanthoxin dehydrogenase (EC 1.1.1.288) from Pisum sativum

29% id,
97% cov

More...

Shewana3_3466: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa

31% id,
91% cov

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

28% id,
97% cov

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

29% id,
91% cov

More...

Shewana3_1694: alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

D2CFJ2: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Taiwanofungus camphoratus

28% id,
100% cov

ADHX_SPAAU / P79896: Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Sparus aurata

28% id,
97% cov

U6C832: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Paecilomyces variotii

27% id,
98% cov

More...

Shewana3_2071: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa

30% id,
91% cov

A0A0K1H1P6: xanthoxin dehydrogenase (EC 1.1.1.288) from Pisum sativum

29% id,
96% cov

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

31% id,
89% cov

More...

Shewana3_3416: D-3-phosphoglycerate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii
ldhA / OMNI|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii

29% id,
92% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

33% id,
80% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

31% id,
83% cov

More...

Shewana3_4105: L-threonine 3-dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ARD1_UROFA / Q4R0J7: D-arabinitol dehydrogenase 1; NADP-dependent D-arabitol dehydrogenase; EC 1.1.1.287 from Uromyces fabae
Q4R0J7: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Uromyces viciae-fabae

29% id,
93% cov

ADHX_DROME / P46415: Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; Octanol dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.73; EC 1.1.1.284 from Drosophila melanogaster

27% id,
97% cov

J7GHV7: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Lactuca sativa

27% id,
97% cov

More...

Shewana3_1379: dTDP-glucose 4,6 dehydratase (RefSeq)
is similar to:
PaperBLAST

RMD_ANETH / Q6T1X6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Aneurinibacillus thermoaerophilus

27% id,
99% cov

RMD_PSEAE / Q9HTB6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Pseudomonas aeruginosa
Q9HTB6: GDP-4-dehydro-6-deoxy-D-mannose reductase (EC 1.1.1.281) from Pseudomonas aeruginosa

26% id,
80% cov

Shewana3_1476: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (RefSeq)
is similar to:
PaperBLAST

O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum

28% id,
91% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

29% id,
79% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

29% id,
76% cov

More...

Shewana3_0249: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

30% id,
86% cov

Shewana3_3687: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

A0A0K1H1P6: xanthoxin dehydrogenase (EC 1.1.1.288) from Pisum sativum

29% id,
87% cov

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

30% id,
79% cov

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

29% id,
69% cov

Shewana3_1168: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

29% id,
82% cov

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

28% id,
82% cov

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

24% id,
74% cov

Shewana3_1687: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

26% id,
94% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

26% id,
91% cov

Shewana3_0437: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

35% id,
65% cov

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

29% id,
72% cov

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa

28% id,
72% cov

More...

Shewana3_1528: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

30% id,
75% cov

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

27% id,
76% cov

Shewana3_0305: alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ARD1_UROFA / Q4R0J7: D-arabinitol dehydrogenase 1; NADP-dependent D-arabitol dehydrogenase; EC 1.1.1.287 from Uromyces fabae
Q4R0J7: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Uromyces viciae-fabae

23% id,
94% cov

ADHL_GADMO / P81601: Alcohol dehydrogenase class-3 chain L; Alcohol dehydrogenase class-III chain L; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Gadus morhua

27% id,
78% cov

D2CFJ2: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Taiwanofungus camphoratus

26% id,
78% cov

More...

Shewana3_0583: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq)
is similar to:
PaperBLAST

vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium

24% id,
87% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

24% id,
88% cov

O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum

29% id,
70% cov

More...

Shewana3_0509: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

24% id,
82% cov

Shewana3_1737: FAD linked oxidase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

29% id,
60% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

25% id,
56% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

25% id,
45% cov

More...

Shewana3_2905: FAD linked oxidase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

25% id,
65% cov

Shewana3_0130: molybdopterin biosynthesis protein MoeB (RefSeq)
is similar to:
PaperBLAST

A4QB65: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Corynebacterium glutamicum

28% id,
30% cov

Q9X5C9: quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Corynebacterium glutamicum

28% id,
30% cov

Shewana3_3709: dTDP-4-dehydrorhamnose reductase (RefSeq)
is similar to:
PaperBLAST

A0A1D8NEA1: methylglyoxal reductase (NADPH) (EC 1.1.1.283) from Yarrowia lipolytica

29% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 31 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2360270-2361118 (frame +2) on 248374
is similar to:
PaperBLAST

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans
Also see hits to annotated proteins above

31% id,
93% cov

4927895-4928947 (frame +2) on 248374
is similar to:
PaperBLAST

ARD1_UROFA / Q4R0J7: D-arabinitol dehydrogenase 1; NADP-dependent D-arabitol dehydrogenase; EC 1.1.1.287 from Uromyces fabae
Q4R0J7: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Uromyces viciae-fabae
Also see hits to annotated proteins above

29% id,
98% cov

341204-342301 (frame +2) on 248374
is similar to:
PaperBLAST

ARD1_UROFA / Q4R0J7: D-arabinitol dehydrogenase 1; NADP-dependent D-arabitol dehydrogenase; EC 1.1.1.287 from Uromyces fabae
Q4R0J7: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Uromyces viciae-fabae
Also see hits to annotated proteins above

23% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory