Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 25 curated entries in PaperBLAST's database that match '1.1.1.28' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3319: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) is similar to:	PaperBLAST
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	63% id, 100% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	63% id, 100% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	57% id, 98% cov
Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum	50% id, 98% cov
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	45% id, 95% cov
CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides	36% id, 90% cov
vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium	34% id, 95% cov
ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactobacillus plantarum C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus plantarum	36% id, 89% cov
F8RPR8: D-lactate dehydrogenase (EC 1.1.1.28) from Bacillus coagulans	34% id, 95% cov
CH_091795: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus pentosus	36% id, 89% cov
LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii ldhA / OMNI\|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii P26297: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus delbrueckii	35% id, 90% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	38% id, 83% cov
LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici ldhD / GI\|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici	34% id, 89% cov
GB\|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus	33% id, 88% cov
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	28% id, 98% cov
2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera	29% id, 74% cov
More...

Shewana3_3201: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) is similar to:	PaperBLAST
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	34% id, 89% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	34% id, 89% cov
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	36% id, 84% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	34% id, 87% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	36% id, 79% cov
vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium	34% id, 81% cov
2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera	31% id, 88% cov
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	33% id, 81% cov
F8RPR8: D-lactate dehydrogenase (EC 1.1.1.28) from Bacillus coagulans	29% id, 88% cov
LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii ldhA / OMNI\|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii P26297: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus delbrueckii	28% id, 89% cov
Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum	32% id, 76% cov
GB\|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus	28% id, 86% cov
CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides	28% id, 81% cov
LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici ldhD / GI\|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici	26% id, 81% cov
ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactobacillus plantarum C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus plantarum	27% id, 75% cov
CH_091795: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus pentosus	27% id, 75% cov
More...

Shewana3_3416: D-3-phosphoglycerate dehydrogenase (RefSeq) is similar to:	PaperBLAST
LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii ldhA / OMNI\|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii P26297: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus delbrueckii	29% id, 92% cov
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	33% id, 80% cov
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	31% id, 83% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	31% id, 83% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	31% id, 83% cov
LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici ldhD / GI\|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici	29% id, 85% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	31% id, 81% cov
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	28% id, 87% cov
F8RPR8: D-lactate dehydrogenase (EC 1.1.1.28) from Bacillus coagulans	27% id, 92% cov
2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera	29% id, 81% cov
ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactobacillus plantarum C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus plantarum	28% id, 85% cov
CH_091795: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus pentosus	27% id, 85% cov
vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium	27% id, 81% cov
Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum	28% id, 77% cov
GB\|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus	29% id, 70% cov
CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides	29% id, 69% cov
More...

Shewana3_1476: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (RefSeq) is similar to:	PaperBLAST
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	29% id, 79% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	29% id, 76% cov
GB\|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus	25% id, 81% cov
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	29% id, 59% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	29% id, 59% cov
More...

Shewana3_0583: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) is similar to:	PaperBLAST
vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium	24% id, 87% cov
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	24% id, 88% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	25% id, 78% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	28% id, 58% cov
LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii ldhA / OMNI\|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii P26297: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus delbrueckii	22% id, 72% cov
CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides	24% id, 67% cov
2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera	22% id, 72% cov
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	23% id, 67% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	23% id, 67% cov
GB\|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus	20% id, 74% cov
Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum	23% id, 58% cov
More...

Shewana3_1737: FAD linked oxidase domain-containing protein (RefSeq) is similar to:	PaperBLAST
Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix	29% id, 60% cov
A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus	25% id, 56% cov
Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix	32% id, 28% cov

Shewana3_2905: FAD linked oxidase domain-containing protein (RefSeq) is similar to:	PaperBLAST
A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus	25% id, 65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory