Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 10 curated entries in PaperBLAST's database that match '1.1.1.282' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_0043: shikimate 5-dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q88K85: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida

31% id,
94% cov

Q88JP1: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida

27% id,
96% cov

A4QB65: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Corynebacterium glutamicum

27% id,
94% cov

More...

Shewana3_0130: molybdopterin biosynthesis protein MoeB (RefSeq)
is similar to:
PaperBLAST

A4QB65: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Corynebacterium glutamicum

28% id,
30% cov

Q9X5C9: quinate dehydrogenase (EC 1.1.1.24); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Corynebacterium glutamicum

28% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory