Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 2 curated entries in PaperBLAST's database that match '1.1.1.378'.

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_2690: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

37% id,
98% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

36% id,
99% cov

Shewana3_2558: 3-oxoacyl-[acyl-carrier-protein] reductase (RefSeq)
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

35% id,
99% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

33% id,
98% cov

Shewana3_3466: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

34% id,
97% cov

Shewana3_0327: 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

34% id,
95% cov

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

32% id,
97% cov

Shewana3_1982: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

34% id,
96% cov

Shewana3_0249: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

32% id,
96% cov

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

31% id,
96% cov

Shewana3_1528: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

31% id,
94% cov

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

30% id,
82% cov

Shewana3_2071: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

29% id,
96% cov

Shewana3_0437: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

30% id,
84% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

27% id,
85% cov

Shewana3_1687: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

25% id,
99% cov

Shewana3_3687: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

27% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory