Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 67 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_1750: isocitrate dehydrogenase, NADP-dependent (RefSeq)
is similar to:
PaperBLAST

IDH_AZOVI / P16100: Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Azotobacter vinelandii
icd / P16100: isocitrate dehydrogenase (NADP-dependent) (EC 1.1.1.42) from Azotobacter vinelandii

73% id,
99% cov

Q1XIQ9: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea

71% id,
99% cov

idh / Q8L0X8: isocitrate dehydrogenase (EC 1.1.1.42) from Chlorobium limicola

71% id,
100% cov

More...

Shewana3_2890: isocitrate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

O29610: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Archaeoglobus fulgidus

38% id,
93% cov

IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii

37% id,
92% cov

icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui

37% id,
92% cov

More...

Shewana3_3760: 3-isopropylmalate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum

27% id,
95% cov

Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix

29% id,
84% cov

O29610: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Archaeoglobus fulgidus

25% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory