Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 6 curated entries in PaperBLAST's database that match '1.1.3.21' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3310: FAD dependent oxidoreductase (RefSeq)
is similar to:
PaperBLAST

Q833L7: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus faecalis

28% id,
56% cov

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

28% id,
55% cov

Shewana3_3101: FAD dependent oxidoreductase (RefSeq)
is similar to:
PaperBLAST

glpO: glycerol-3-phosphate oxidase; EC 1.1.3.21 from Mycoplasma mycoides
Q70GP9: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Mycoplasma mycoides

28% id,
53% cov

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

38% id,
9% cov

Shewana3_3326: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq)
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

21% id,
34% cov

Shewana3_2537: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq)
is similar to:
PaperBLAST

glpO: glycerol-3-phosphate oxidase; EC 1.1.3.21 from Mycoplasma mycoides
Q70GP9: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Mycoplasma mycoides

42% id,
11% cov

Shewana3_3318: flavocytochrome c (RefSeq)
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

35% id,
12% cov

Shewana3_1010: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (RefSeq)
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

29% id,
13% cov

Shewana3_1835: FAD dependent oxidoreductase (RefSeq)
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

43% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3972421-3973629 (frame -2) on 248374
is similar to:
PaperBLAST

Q833L7: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus faecalis
Also see hits to annotated proteins above

28% id,
56% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory