Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 11 curated entries in PaperBLAST's database that match '1.1.99.39'.

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_1737: FAD linked oxidase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

ydiJ / Q88EH0: (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas putida
PP_4493: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas putida

46% id,
100% cov

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

25% id,
61% cov

Shewana3_2905: FAD linked oxidase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

D2HDH_PSEU5 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Pseudomonas stutzeri

26% id,
66% cov

ydiJ / Q88EH0: (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas putida
PP_4493: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas putida

23% id,
66% cov

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

30% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory