Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 19 curated entries in PaperBLAST's database that match '1.1.99.6'.

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_2905: FAD linked oxidase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

RR42_RS17315: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Cupriavidus basilensis

21% id,
95% cov

G4RPF4: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Thermoproteus tenax

26% id,
59% cov

Psest_3841: D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

28% id,
53% cov

More...

Shewana3_1737: FAD linked oxidase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

29% id,
60% cov

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

28% id,
60% cov

Q974L0: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Sulfurisphaera tokodaii

28% id,
59% cov

More...

Shewana3_2906: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

SMc00926: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Sinorhizobium meliloti

25% id,
53% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory