Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 111 curated entries in PaperBLAST's database that match '1.13.11.1'.

These curated entries have 82 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_2369: beta-lactamase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

sdo / B7J413: sulfur dioxygenase α subunit (EC 1.13.11.18) from Acidithiobacillus ferrooxidans
B7J413: persulfide dioxygenase (EC 1.13.11.18) from Acidithiobacillus ferrooxidans

31% id,
76% cov

Shewana3_1493: beta-lactamase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

sdo / B7J413: sulfur dioxygenase α subunit (EC 1.13.11.18) from Acidithiobacillus ferrooxidans
B7J413: persulfide dioxygenase (EC 1.13.11.18) from Acidithiobacillus ferrooxidans

30% id,
75% cov

G5ELA4: persulfide dioxygenase (EC 1.13.11.18) from Staphylococcus aureus

26% id,
47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory