Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 10 curated entries in PaperBLAST's database that match '1.14.13.2' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_0331: monooxygenase, FAD-binding (RefSeq)
is similar to:
PaperBLAST

pobA / Q9R9T1: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas putida
Q9R9T1: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas putida

21% id,
95% cov

Pf6N2E2_2914: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas fluorescens

24% id,
85% cov

pobA / F2JUE7: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Marinomonas mediterranea

23% id,
84% cov

More...

Shewana3_3051: glutamate synthase subunit beta (RefSeq)
is similar to:
PaperBLAST

pobA / F2JUE7: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Marinomonas mediterranea

29% id,
38% cov

RR42_RS21940: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Cupriavidus basilensis

31% id,
31% cov

Shewana3_3502: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (RefSeq)
is similar to:
PaperBLAST

PHHY_PSEAE / P20586: p-hydroxybenzoate hydroxylase; PHBH; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas aeruginosa

26% id,
30% cov

PHHY_PSEFL / P00438: p-hydroxybenzoate hydroxylase; PHBH; PHBHase; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas fluorescens
pobA / P00438: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas fluorescens

26% id,
30% cov

Shewana3_0428: dihydrolipoamide dehydrogenase (RefSeq)
is similar to:
PaperBLAST

pobA / Q9R9T1: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas putida
Q9R9T1: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas putida

52% id,
8% cov

Shewana3_1010: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (RefSeq)
is similar to:
PaperBLAST

Q6SSJ6: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2); 3-hydroxybenzoate 4-monooxygenase (EC 1.14.13.23) from Comamonas testosteroni

36% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory