Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 15 curated entries in PaperBLAST's database that match '1.2.1.16' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3092: succinate semialdehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

SO1275: succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] from Shewanella oneidensis

94% id,
100% cov

AO353_11505: succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

71% id,
100% cov

gabD / Q4KKA2: NAD(P)-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

71% id,
100% cov

More...

Shewana3_0250: aldehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

SSDH_PAENI / Q8GAI8: Succinate-semialdehyde dehydrogenase; SsaDH; EC 1.2.1.16 from Paenarthrobacter nicotinovorans

37% id,
97% cov

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

35% id,
98% cov

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

35% id,
97% cov

More...

Shewana3_3105: aldehyde dehydrogenase (acceptor) (RefSeq)
is similar to:
PaperBLAST

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

36% id,
98% cov

SSDH_PAENI / Q8GAI8: Succinate-semialdehyde dehydrogenase; SsaDH; EC 1.2.1.16 from Paenarthrobacter nicotinovorans

36% id,
99% cov

AO353_11505: succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

36% id,
99% cov

More...

Shewana3_1788: bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

sucD / GB|AAA92347.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Clostridium kluyveri

37% id,
96% cov

SSDH1_SCHPO / Q9US47: Putative succinate-semialdehyde dehydrogenase C1002.12c [NADP(+)]; SSDH; EC 1.2.1.16 from Schizosaccharomyces pombe

24% id,
82% cov

Q976X5: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); aldehyde dehydrogenase [NAD(P)+] (EC 1.2.1.5) from Sulfurisphaera tokodaii

24% id,
50% cov

More...

Shewana3_0612: succinylglutamic semialdehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

34% id,
95% cov

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

33% id,
95% cov

gabD / Q4KKA2: NAD(P)-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

33% id,
95% cov

More...

Shewana3_2770: methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq)
is similar to:
PaperBLAST

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

32% id,
99% cov

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

30% id,
96% cov

SO1275: succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] from Shewanella oneidensis

30% id,
96% cov

More...

Shewana3_3107: methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq)
is similar to:
PaperBLAST

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

31% id,
98% cov

Q8ZPI3: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Salmonella enterica

32% id,
94% cov

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

31% id,
96% cov

More...

Shewana3_0819: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

32% id,
96% cov

gabD / Q4KKA2: NAD(P)-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

32% id,
93% cov

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

31% id,
97% cov

More...

Shewana3_3251: aldehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

SSDH_PAENI / Q8GAI8: Succinate-semialdehyde dehydrogenase; SsaDH; EC 1.2.1.16 from Paenarthrobacter nicotinovorans

28% id,
91% cov

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

26% id,
95% cov

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

27% id,
90% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory