Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 24 curated entries in PaperBLAST's database that match '1.2.1.24' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3092: succinate semialdehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

nmpF / A0A222FYW4: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Alicycliphilus sp.

68% id,
100% cov

TGNE_ACIAD / Q6F9G0: Succinate semialdehyde dehydrogenase; SSA dehydrogenase; EC 1.2.1.24 from Acinetobacter baylyi

62% id,
99% cov

SSDH_ARATH / Q9SAK4: Succinate-semialdehyde dehydrogenase, mitochondrial; At-SSADH1; Aldehyde dehydrogenase family 5 member F1; NAD(+)-dependent succinic semialdehyde dehydrogenase; Protein ENLARGED FIL EXPRESSING DOMAIN 1; EC 1.2.1.24 from Arabidopsis thaliana

59% id,
91% cov

More...

Shewana3_3105: aldehyde dehydrogenase (acceptor) (RefSeq)
is similar to:
PaperBLAST

AldH / b1300: γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli
puuC / P23883: γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli

56% id,
98% cov

nmpF / A0A222FYW4: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Alicycliphilus sp.

35% id,
97% cov

B0JFD4: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Lucilia cuprina

35% id,
95% cov

More...

Shewana3_0250: aldehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

AldH / b1300: γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli
puuC / P23883: γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli

40% id,
95% cov

nmpF / A0A222FYW4: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Alicycliphilus sp.

34% id,
98% cov

TGNE_ACIAD / Q6F9G0: Succinate semialdehyde dehydrogenase; SSA dehydrogenase; EC 1.2.1.24 from Acinetobacter baylyi

32% id,
98% cov

More...

Shewana3_3107: methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq)
is similar to:
PaperBLAST

AldH / b1300: γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli
puuC / P23883: γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli

33% id,
90% cov

KGSD1_AZOBR / Q1JUP4: Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 from Azospirillum brasilense
Q1JUP4: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24); 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Azospirillum brasilense

30% id,
97% cov

nmpF / A0A222FYW4: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Alicycliphilus sp.

30% id,
93% cov

More...

Shewana3_0612: succinylglutamic semialdehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

nmpF / A0A222FYW4: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Alicycliphilus sp.

31% id,
95% cov

SSDH_ARATH / Q9SAK4: Succinate-semialdehyde dehydrogenase, mitochondrial; At-SSADH1; Aldehyde dehydrogenase family 5 member F1; NAD(+)-dependent succinic semialdehyde dehydrogenase; Protein ENLARGED FIL EXPRESSING DOMAIN 1; EC 1.2.1.24 from Arabidopsis thaliana

33% id,
87% cov

Q9VBP6: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Drosophila melanogaster

31% id,
91% cov

More...

Shewana3_2770: methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq)
is similar to:
PaperBLAST

KGSD1_AZOBR / Q1JUP4: Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 from Azospirillum brasilense
Q1JUP4: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24); 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Azospirillum brasilense

29% id,
98% cov

AldH / b1300: γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli
puuC / P23883: γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli

30% id,
94% cov

SSDH_ARATH / Q9SAK4: Succinate-semialdehyde dehydrogenase, mitochondrial; At-SSADH1; Aldehyde dehydrogenase family 5 member F1; NAD(+)-dependent succinic semialdehyde dehydrogenase; Protein ENLARGED FIL EXPRESSING DOMAIN 1; EC 1.2.1.24 from Arabidopsis thaliana

31% id,
88% cov

More...

Shewana3_0819: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

AldH / b1300: γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli
puuC / P23883: γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (EC 1.2.1.19; EC 1.2.1.24; EC 1.2.1.99) from Escherichia coli

30% id,
97% cov

nmpF / A0A222FYW4: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Alicycliphilus sp.

30% id,
96% cov

TGNE_ACIAD / Q6F9G0: Succinate semialdehyde dehydrogenase; SSA dehydrogenase; EC 1.2.1.24 from Acinetobacter baylyi

30% id,
95% cov

More...

Shewana3_2766: 3-hydroxyisobutyrate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

SSR1 / B1Q3F6: NAD-dependent succinate semialdehyde dehydrogenase (EC 1.2.1.24) from Solanum lycopersicum

27% id,
100% cov

Shewana3_2554: 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq)
is similar to:
PaperBLAST

SSR1 / B1Q3F6: NAD-dependent succinate semialdehyde dehydrogenase (EC 1.2.1.24) from Solanum lycopersicum

27% id,
100% cov

Shewana3_3251: aldehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

TGNE_ACIAD / Q6F9G0: Succinate semialdehyde dehydrogenase; SSA dehydrogenase; EC 1.2.1.24 from Acinetobacter baylyi

29% id,
90% cov

nmpF / A0A222FYW4: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Alicycliphilus sp.

26% id,
91% cov

Q9VBP6: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Drosophila melanogaster

27% id,
87% cov

More...

Shewana3_1788: bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q97XS9: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24); glyceraldehyde-3-phosphate dehydrogenase (NADP+) (EC 1.2.1.9) from Saccharolobus solfataricus

26% id,
51% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3308668-3310209 (frame -2) on 248374
is similar to:
PaperBLAST

KGSD1_AZOBR / Q1JUP4: Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 from Azospirillum brasilense
Q1JUP4: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24); 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Azospirillum brasilense
Also see hits to annotated proteins above

29% id,
99% cov

Q9VBP6: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24) from Drosophila melanogaster
Also see hits to annotated proteins above

28% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory