Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 21 curated entries in PaperBLAST's database that match '1.2.1.27' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_2770: methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq)
is similar to:
PaperBLAST

MMSA_PSEAE / P28810: Methylmalonate-semialdehyde dehydrogenase [acylating]; MMSDH; EC 1.2.1.27 from Pseudomonas aeruginosa
mmsA / P28810: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Pseudomonas aeruginosa

74% id,
100% cov

Psest_2436: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas stutzeri

57% id,
100% cov

PfGW456L13_5146: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

59% id,
97% cov

More...

Shewana3_3107: methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq)
is similar to:
PaperBLAST

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

61% id,
100% cov

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

61% id,
100% cov

BWI76_RS03070: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Klebsiella michiganensis

61% id,
100% cov

More...

Shewana3_3105: aldehyde dehydrogenase (acceptor) (RefSeq)
is similar to:
PaperBLAST

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

36% id,
94% cov

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

34% id,
97% cov

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

34% id,
94% cov

More...

Shewana3_0250: aldehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

31% id,
99% cov

BWI76_RS03070: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Klebsiella michiganensis

31% id,
91% cov

Psest_2436: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas stutzeri

29% id,
96% cov

More...

Shewana3_0819: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Psest_2436: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas stutzeri

32% id,
97% cov

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

30% id,
97% cov

dntE / Q8VUC5: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Burkholderia cepacia

31% id,
93% cov

More...

Shewana3_3092: succinate semialdehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

30% id,
96% cov

Q97YT9: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Saccharolobus solfataricus

30% id,
94% cov

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

31% id,
93% cov

More...

Shewana3_0612: succinylglutamic semialdehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

30% id,
95% cov

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

31% id,
91% cov

dntE / Q8VUC5: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Burkholderia cepacia

30% id,
88% cov

More...

Shewana3_3251: aldehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

AO353_05990: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

27% id,
87% cov

Q97YT9: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Saccharolobus solfataricus

27% id,
85% cov

Pf1N1B4_1229: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

27% id,
82% cov

More...

Shewana3_1788: bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

20% id,
81% cov

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

22% id,
74% cov

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

24% id,
66% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory