Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 13 curated entries in PaperBLAST's database that match '1.2.7.5' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_2340: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq)
is similar to:
PaperBLAST

B9MQI1: aldehyde ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.5); glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) (subunit 1/2) (EC 1.2.7.6) from Caldicellulosiruptor bescii

31% id,
71% cov

Shewana3_0711: response regulator receiver protein (RefSeq)
is similar to:
PaperBLAST

B9MQI1: aldehyde ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.5); glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) (subunit 1/2) (EC 1.2.7.6) from Caldicellulosiruptor bescii

28% id,
53% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory