Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 13 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_0427: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq)
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

58% id,
100% cov

Shewana3_3012: bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

TyrA / b2600: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli
tyrA / P07023: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli

57% id,
99% cov

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

53% id,
98% cov

J9XQS6: prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium

32% id,
89% cov

Shewana3_2129: dihydrolipoamide acetyltransferase (RefSeq)
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

35% id,
83% cov

Shewana3_1711: 2-oxoglutarate dehydrogenase E2 component (RefSeq)
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

34% id,
67% cov

Shewana3_3007: chorismate mutase / prephenate dehydratase (RefSeq)
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

28% id,
57% cov

Shewana3_1669: 3-methylcrotonoyl-CoA carboxylase, alpha subunit (RefSeq)
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

22% id,
34% cov

Shewana3_2797: potassium efflux system protein (RefSeq)
is similar to:
PaperBLAST

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

30% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory