Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 3 curated entries in PaperBLAST's database that match '1.3.8.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_1672: isovaleryl-CoA dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

39% id,
99% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

38% id,
91% cov

Shewana3_2769: acyl-CoA dehydrogenase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

36% id,
99% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

38% id,
91% cov

Shewana3_1984: acyl-CoA dehydrogenase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

Q39QF5: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) from Geobacter metallireducens

30% id,
98% cov

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

31% id,
78% cov

Shewana3_2552: acyl-CoA dehydrogenase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

CH1CO_SYNAS / Q2LQN9: Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase; Ch1CoA; EC 1.3.8.10 from Syntrophus aciditrophicus
SYN_02587 / Q2LQN9: cyclohex-1-ene-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.8.10) from Syntrophus aciditrophicus

27% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory