Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 42 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_1785: glutamate dehydrogenase (NAD) (RefSeq)
is similar to:
PaperBLAST

DHE2_PSEAE / Q9HZE0: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Pseudomonas aeruginosa

49% id,
97% cov

Psest_1944: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form from Pseudomonas stutzeri

47% id,
98% cov

DHE2_HALED / E1V4J5: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Halomonas elongata

47% id,
99% cov

More...

Shewana3_1742: leucine dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q0E5I0: glutamate dehydrogenase (EC 1.4.1.2) from Halobacillus halophilus

27% id,
80% cov

GUDB_BACSU / P50735: Cryptic catabolic NAD-specific glutamate dehydrogenase GudB; NAD-GDH; EC 1.4.1.2 from Bacillus subtilis

30% id,
69% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory