Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 124 curated entries in PaperBLAST's database that match '1.5.1.2'.

These curated entries have 99 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3612: 5,10-methylenetetrahydrofolate reductase (RefSeq)
is similar to:
PaperBLAST

METF_ECOLI / P0AEZ1: 5,10-methylenetetrahydrofolate reductase; EC 1.5.1.20 from Escherichia coli
MetF / b3941: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) from Escherichia coli
Q0SY49: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Shigella flexneri

73% id,
99% cov

Q7MYD0: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Photorhabdus luminescens

72% id,
100% cov

Q87L52: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Vibrio parahaemolyticus

69% id,
99% cov

More...

Shewana3_1193: pyrroline-5-carboxylate reductase (RefSeq)
is similar to:
PaperBLAST

Shew_1136: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Shewanella loihica

64% id,
100% cov

P5CR_PSEAE / P22008: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Pseudomonas aeruginosa

43% id,
99% cov

P5CR_METAC / Q9HH99: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Methanosarcina acetivorans

35% id,
100% cov

More...

Shewana3_2663: methenyltetrahydrofolate cyclohydrolase (RefSeq)
is similar to:
PaperBLAST

D3ZUA0: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Rattus norvegicus

42% id,
87% cov

D3YZG8: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Mus musculus

42% id,
87% cov

Shewana3_3282: B12-dependent methionine synthase (RefSeq)
is similar to:
PaperBLAST

YITJ_BACSU / O06745: Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase; EC 2.1.1.10; EC 1.5.1.20 from Bacillus subtilis

25% id,
57% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3179560-3180567 (frame +1) on 248374
is similar to:
PaperBLAST

D3ZUA0: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Rattus norvegicus
Also see hits to annotated proteins above

41% id,
91% cov

D3YZG8: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Mus musculus
Also see hits to annotated proteins above

39% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory